fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G12080 ATAHL1, AHL1 AT-hook motif nuclear-localized protein 1 (.1)

>AT4G12080.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, SacI, SalI, SmaI, XbaI, XhoI
Name Recognition sequence Cut positions
PvuII CAG|CTG 950
SpeI A|CTAGT 813
StyI C|C[AT][AT]GG 283


Click here to view TAIR data

>AT4G12080.1 length:1071
ATGGTCTTAA ATATGGAGTC TACCGGAGAA GCTGTTAGAT CAACCACCGG 
50
TAACGACGGT GGTATTACGG TGGTTAGATC CGACGCGCCG TCAGATTTCC 
100
ACGTAGCTCA AAGATCAGAA AGCTCAAACC AATCTCCCAC CTCTGTCACT 
150
CCTCCTCCAC CACAGCCATC GTCTCATCAC ACAGCTCCTC CGCCGCTGCA 
200
AATTTCGACG GTGACGACTA CGACTACGAC GGCCGCGATG GAAGGTATCT 
250
CCGGTGGACT GATGAAGAAG AAGCGTGGAC GGCCAAGGAA GTATGGACCG 
300
GACGGGACTG TTGTAGCGTT ATCTCCTAAA CCGATTTCAT CAGCGCCGGC 
350
GCCGTCGCAT CTTCCGCCGC CGAGTTCACA CGTCATCGAT TTCTCCGCTT 
400
CTGAGAAACG TAGCAAAGTG AAACCAACGA ACTCGTTTAA CAGAACAAAG 
450
TATCATCACC AAGTTGAGAA TTTGGGTGAA TGGGCTCCTT GCTCCGTCGG 
500
TGGTAATTTC ACACCTCATA TAATCACAGT CAACACCGGC GAGGATGTAA 
550
CAATGAAGAT AATCTCGTTT TCGCAACAAG GACCTCGCTC TATTTGTGTT 
600
CTGTCAGCAA ACGGTGTTAT TTCAAGCGTT ACACTTCGTC AGCCAGATTC 
650
CTCTGGCGGC ACATTGACAT ACGAAGGTCG GTTTGAGATA TTATCATTAT 
700
CCGGGTCATT CATGCCTAAT GATTCAGGCG GAACACGAAG TAGAACGGGA 
750
GGAATGAGTG TATCGTTAGC AAGTCCCGAT GGACGTGTAG TAGGCGGTGG 
800
CCTCGCCGGT TTACTAGTAG CCGCGAGTCC GGTTCAGGTG GTTGTAGGAA 
850
GTTTTTTAGC GGGCACTGAC CATCAAGATC AGAAACCGAA AAAGAACAAA 
900
CATGATTTCA TGTTGTCGAG TCCTACCGCT GCAATTCCTA TCTCTAGTGC 
950
AGCTGATCAC CGGACAATCC ATTCGGTCTC GTCTCTTCCG GTCAATAATA 
1000
ATACATGGCA GACTTCTTTA GCTTCCGATC CAAGAAACAA GCATACCGAT 
1050
ATTAATGTCA ATGTAACTTG A
1100

>AT4G12080.1 longest ORF length:356
MVLNMESTGE AVRSTTGNDG GITVVRSDAP SDFHVAQRSE SSNQSPTSVT 
50
PPPPQPSSHH TAPPPLQIST VTTTTTTAAM EGISGGLMKK KRGRPRKYGP 
100
DGTVVALSPK PISSAPAPSH LPPPSSHVID FSASEKRSKV KPTNSFNRTK 
150
YHHQVENLGE WAPCSVGGNF TPHIITVNTG EDVTMKIISF SQQGPRSICV 
200
LSANGVISSV TLRQPDSSGG TLTYEGRFEI LSLSGSFMPN DSGGTRSRTG 
250
GMSVSLASPD GRVVGGGLAG LLVAASPVQV VVGSFLAGTD HQDQKPKKNK 
300
HDFMLSSPTA AIPISSAADH RTIHSVSSLP VNNNTWQTSL ASDPRNKHTD 
350
INVNVT
400