fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G13040 Integrase-type DNA-binding superfamily protein (.1.2.3)

>AT4G13040.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, HindIII, HpaI, KpnI, NcoI, NheI, NotI, PacI, PstI, PvuII, SalI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
EcoRV GAT|ATC 244
NdeI CA|TATG 217
SacI GAGCT|C 499
SmaI CCC|GGG 136


Click here to view TAIR data

>AT4G13040.1 length:681
ATGGTGAGCT TACGAAGACG TAGGCTATTG GGTCTTTGTT GTGGACCAAA 
50
TGGTTATGTG ACACCACTTC CATTTTTAAC TGCTGAGGAG ATGATCACTG 
100
GGATTCCAAA TCCTAATGCC AGAGCAGCTT ATAATCCCGG GCCAGCAGAA 
150
ACGGTTACAA CGGTTATCGT GGAGAAAAAG GCTATTGAAG AAAGAAGCCG 
200
AAGAACTCGG TCAAAACATA TGCATTTCAG GTCTGATTAT TCAGATATCT 
250
CACCGGTTAA TTCTGATTCC ATCTCACCAA AATACCAGCC GCCGAAACGA 
300
AGAAAGCAGC ATAGAAGAAA GCGAGTACAT AACCAAGAAC CATGTTTGAT 
350
GAGAGGAGTC TACTACAAAA ACATGAAATG GCAAGCCGCC ATTAAAGTCG 
400
AGAAGAAACA AATCCACTTA GGCACTTTCT CTTCTCAAGA AGAGGCTGCT 
450
CGCTTATACG ATAGGGCTGC TTTCATGTGT GGGAGGGAAC CGAACTTTGA 
500
GCTCTCGGAA GAAGTTATAC GAGAACTCAA ACAGCAAAGC TGGGAAGAGT 
550
TCTTGAATTG CACACGCCGA ACAATTACGA ACAAAAAACC AAAGAGTAGG 
600
ATAGAACATG AGGATACGAA GATCAATGCC AGCATGCCAC ATCAACCAGA 
650
AGAAGAAGAG CAAGATTCAG ACAAAATGTG A
700

>AT4G13040.1 longest ORF length:226
MVSLRRRRLL GLCCGPNGYV TPLPFLTAEE MITGIPNPNA RAAYNPGPAE 
50
TVTTVIVEKK AIEERSRRTR SKHMHFRSDY SDISPVNSDS ISPKYQPPKR 
100
RKQHRRKRVH NQEPCLMRGV YYKNMKWQAA IKVEKKQIHL GTFSSQEEAA 
150
RLYDRAAFMC GREPNFELSE EVIRELKQQS WEEFLNCTRR TITNKKPKSR 
200
IEHEDTKINA SMPHQPEEEE QDSDKM
250