fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G13040 Integrase-type DNA-binding superfamily protein (.1.2.3)

>AT4G13040.2 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NheI, NotI, PacI, PstI, PvuII, SalI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
NdeI CA|TATG 102
SacI GAGCT|C 331
SmaI CCC|GGG 21


Click here to view TAIR data

>AT4G13040.2 length:513
ATGCCAGAGC AGCTTATAAT CCCGGGCCAG CAGAAACGGT TACAACGGTT 
50
ATCGTGGAGA AAAAGGCTAT TGAAGAAAGA AGCCGAAGAA CTCGGTCAAA 
100
ACATATGCAT TTCAGACCAG CCGCCGAAAC GAAGAAAGCA GCATAGAAGA 
150
AAGCGAGTAC ATAACCAAGA ACCATGTTTG ATGAGAGGAG TCTACTACAA 
200
AAACATGAAA TGGCAAGCCG CCATTAAAGT CGAGAAGAAA CAAATCCACT 
250
TAGGCACTTT CTCTTCTCAA GAAGAGGCTG CTCGCTTATA CGATAGGGCT 
300
GCTTTCATGT GTGGGAGGGA ACCGAACTTT GAGCTCTCGG AAGAAGTTAT 
350
ACGAGAACTC AAACAGCAAA GCTGGGAAGA GTTCTTGAAT TGCACACGCC 
400
GAACAATTAC GAACAAAAAA CCAAAGAGTA GGATAGAACA TGAGGATACG 
450
AAGATCAATG CCAGCATGCC ACATCAACCA GAAGAAGAAG AGCAAGATTC 
500
AGACAAAATG TGA
550

>AT4G13040.2 longest ORF length:170
MPEQLIIPGQ QKRLQRLSWR KRLLKKEAEE LGQNICISDQ PPKRRKQHRR 
50
KRVHNQEPCL MRGVYYKNMK WQAAIKVEKK QIHLGTFSSQ EEAARLYDRA 
100
AFMCGREPNF ELSEEVIREL KQQSWEEFLN CTRRTITNKK PKSRIEHEDT 
150
KINASMPHQP EEEEQDSDKM 
200