fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G13040 Integrase-type DNA-binding superfamily protein (.1.2.3)

>AT4G13040.3 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, HindIII, HpaI, KpnI, NcoI, NheI, NotI, PacI, PstI, PvuII, SalI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
EcoRV GAT|ATC 304
NdeI CA|TATG 277
SacI GAGCT|C 559
SmaI CCC|GGG 196


Click here to view TAIR data

>AT4G13040.3 length:741
ATGAGAATCC ATGAAAAAGG TGGCGGTGGT AGGAGAAAAG TAAAACATTC 
50
AGAAGTCGAT ATGGTGAGCT TACGAAGACG TAGGCTATTG GGTCTTTGTT 
100
GTGGACCAAA TGGTTATGTG ACACCACTTC CATTTTTAAC TGCTGAGGAG 
150
ATGATCACTG GGATTCCAAA TCCTAATGCC AGAGCAGCTT ATAATCCCGG 
200
GCCAGCAGAA ACGGTTACAA CGGTTATCGT GGAGAAAAAG GCTATTGAAG 
250
AAAGAAGCCG AAGAACTCGG TCAAAACATA TGCATTTCAG GTCTGATTAT 
300
TCAGATATCT CACCGGTTAA TTCTGATTCC ATCTCACCAA AATACCAGCC 
350
GCCGAAACGA AGAAAGCAGC ATAGAAGAAA GCGAGTACAT AACCAAGAAC 
400
CATGTTTGAT GAGAGGAGTC TACTACAAAA ACATGAAATG GCAAGCCGCC 
450
ATTAAAGTCG AGAAGAAACA AATCCACTTA GGCACTTTCT CTTCTCAAGA 
500
AGAGGCTGCT CGCTTATACG ATAGGGCTGC TTTCATGTGT GGGAGGGAAC 
550
CGAACTTTGA GCTCTCGGAA GAAGTTATAC GAGAACTCAA ACAGCAAAGC 
600
TGGGAAGAGT TCTTGAATTG CACACGCCGA ACAATTACGA ACAAAAAACC 
650
AAAGAGTAGG ATAGAACATG AGGATACGAA GATCAATGCC AGCATGCCAC 
700
ATCAACCAGA AGAAGAAGAG CAAGATTCAG ACAAAATGTG A
750

>AT4G13040.3 longest ORF length:246
MRIHEKGGGG RRKVKHSEVD MVSLRRRRLL GLCCGPNGYV TPLPFLTAEE 
50
MITGIPNPNA RAAYNPGPAE TVTTVIVEKK AIEERSRRTR SKHMHFRSDY 
100
SDISPVNSDS ISPKYQPPKR RKQHRRKRVH NQEPCLMRGV YYKNMKWQAA 
150
IKVEKKQIHL GTFSSQEEAA RLYDRAAFMC GREPNFELSE EVIRELKQQS 
200
WEEFLNCTRR TITNKKPKSR IEHEDTKINA SMPHQPEEEE QDSDKM
250