fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G17230 SCL13 SCARECROW-like 13 (.1)

>AT4G17230.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, HpaI, KpnI, NheI, NotI, PacI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 755
EcoRI G|AATTC 385
EcoRV GAT|ATC 106
HindIII A|AGCTT 1481
NcoI C|CATGG 1550
NdeI CA|TATG 1076
PstI CTGCA|G 1451
StyI C|C[AT][AT]GG 1550


Click here to view TAIR data

>AT4G17230.1 length:1590
ATGCAAACGT CTCAGAAACA TCACAGTGCG GCTGGACTGC ACATGCTGTA 
50
TCCTCAAGTC TACTGTTCAC CTCAGTTTCA AGCGAAAGAC AACAAAGGCT 
100
TCTCTGATAT CCCGTCCAAA GAAAACTTTT TTACCCTCGA ATCCTCCACT 
150
GCTTCTGGTA GTCTTCCTTC GTATGACTCT CCTTCTGTGA GCATTACATC 
200
TGGCCGGAGC CCGTTTTCTC CTCAGGGCTC TCAGTCTTGC ATCTCGGATC 
250
TCCATCATTC CCCTGACAAC GTCTATGGAT CACCTTTGAG TGGGGTGTCA 
300
TCTCTTGCCT ATGATGAAGC TGGAGTCAAG AGTAAGATTC GGGAACTTGA 
350
GGTCTCGCTG CTGAGTGGTG ATACAAAAGT TGAAGAATTC TCAGGTTTTA 
400
GCCCCGCTGC TGGGAAGTCG TGGAACTGGG ATGAACTTTT GGCTTTGACT 
450
CCACAGTTGG ACTTGAAAGA GGTGCTGGTG GAGGCTGCTC GGGCAGTCGC 
500
TGATGGGGAT TTCGCTACAG CGTATGGATT CCTTGATGTC TTGGAACAGA 
550
TGGTGTCAGT CTCAGGCAGT CCGATCCAAC GGCTAGGCAC TTACATGGCA 
600
GAAGGGCTTA GAGCGAGGCT TGAGGGGTCT GGGAGCAATA TATACAAATC 
650
CTTGAAATGC AATGAACCAA CGGGAAGGGA ACTGATGTCT TACATGAGTG 
700
TTCTCTATGA AATCTGCCCC TACTGGAAAT TCGCGTACAC AACTGCGAAT 
750
GTTGAGATCT TGGAAGCAAT AGCTGGGGAA ACCAGAGTCC ACATTATCGA 
800
TTTTCAGATT GCACAGGGAT CACAATACAT GTTTTTGATT CAGGAGCTTG 
850
CGAAACGCCC TGGTGGGCCG CCGTTGCTGC GTGTGACGGG TGTGGATGAT 
900
TCACAGTCCA CCTATGCTCG TGGGGGAGGA CTCAGCTTGG TAGGTGAGAG 
950
GCTTGCAACT TTGGCGCAGT CATGTGGTGT CCCGTTTGAG TTTCACGATG 
1000
CCATCATGTC TGGGTGCAAG GTGCAGCGGG AACATCTCGG GTTGGAACCT 
1050
GGCTTTGCTG TTGTTGTGAA CTTCCCATAT GTATTACACC ACATGCCAGA 
1100
CGAGAGCGTA AGTGTTGAAA ATCACAGAGA CAGGCTGCTG CATCTGATCA 
1150
AGAGCCTCTC CCCAAAACTG GTTACTCTAG TAGAGCAAGA ATCCAACACA 
1200
AACACCTCGC CATTCCTGTC ACGGTTTGTG GAAACACTGG ATTACTACAC 
1250
AGCGATGTTT GAGTCGATAG ATGCAGCACG GCCACGGGAT GATAAGCAGA 
1300
GAATCAGCGC AGAACAACAC TGTGTAGCAA GAGACATAGT GAACATGATA 
1350
GCATGTGAGG AGTCAGAGAG AGTAGAGAGA CACGAGGTAC TGGGGATATG 
1400
GAGGGTCAGA ATGATGATGG CTGGGTTCAC GGGTTGGCCG GTCAGCACAT 
1450
CTGCAGCGTT TGCAGCGAGT GAGATGCTGA AAGCTTATGA CAAAAACTAC 
1500
AAACTGGGAG GCCATGAAGG AGCGCTCTAC CTCTTCTGGA AGAGACGACC 
1550
CATGGCTACA TGTTCCGTGT GGAAGCCAAA CCCAAACTAG 
1600

>AT4G17230.1 longest ORF length:529
MQTSQKHHSA AGLHMLYPQV YCSPQFQAKD NKGFSDIPSK ENFFTLESST 
50
ASGSLPSYDS PSVSITSGRS PFSPQGSQSC ISDLHHSPDN VYGSPLSGVS 
100
SLAYDEAGVK SKIRELEVSL LSGDTKVEEF SGFSPAAGKS WNWDELLALT 
150
PQLDLKEVLV EAARAVADGD FATAYGFLDV LEQMVSVSGS PIQRLGTYMA 
200
EGLRARLEGS GSNIYKSLKC NEPTGRELMS YMSVLYEICP YWKFAYTTAN 
250
VEILEAIAGE TRVHIIDFQI AQGSQYMFLI QELAKRPGGP PLLRVTGVDD 
300
SQSTYARGGG LSLVGERLAT LAQSCGVPFE FHDAIMSGCK VQREHLGLEP 
350
GFAVVVNFPY VLHHMPDESV SVENHRDRLL HLIKSLSPKL VTLVEQESNT 
400
NTSPFLSRFV ETLDYYTAMF ESIDAARPRD DKQRISAEQH CVARDIVNMI 
450
ACEESERVER HEVLGIWRVR MMMAGFTGWP VSTSAAFAAS EMLKAYDKNY 
500
KLGGHEGALY LFWKRRPMAT CSVWKPNPN
550