fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G17780 MYB39, AtMYB39 F-box and associated interaction domains-containing protein (.1)

>AT4G17780.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SpeI, XhoI
Name Recognition sequence Cut positions
SmaI CCC|GGG 232, 902
StyI C|C[AT][AT]GG 220, 689
XbaI T|CTAGA 51


Click here to view TAIR data

>AT4G17780.1 length:1044
ATGGAGGAAG AAGAGAAAAA CCCTAGTTCG ATCTACATAG TTGCCGATCT 
50
TCTAGAAGAT ATATTCCTTC GACTTCCCTT GAAATCCATT CTCATATCGA 
100
AAAGCGTCTC AAAACGATGG AGATCAATTC TTGAGTCGAA GACGTTCGTG 
150
GAGAGACGAA TGAGTCTTCA AAAGAAGCGC AAAATCCTGG CTGCTTACAA 
200
CTGCAAATGC GGCTGGGAGC CTAGGCTCCT CCCCGGGTCG TCGCAGTGCA 
250
AAGGGAACGA AGAGATCGTC TATCTGCACT GCAACGCCGC ACAACCCTCG 
300
TTTACTTGCG ACGGTTTGGT CTGCATTCTC GAACCACGTT GGATAGACGT 
350
TTTGAACCCC TGGACAAGGC AACTCCGGCG ATACGGATTC GGATTTGGAA 
400
CCATATTTGG AGTAGGTTCG GCTTTCTCTC CAAGACATTG GGCAATGGGA 
450
TTTGGTAAAG ATAAAGTTAC CGGAAGCTAT AAAGTAGTGA AGATGTGTTT 
500
AATATCTTTC AGTGAAATTT GTGCACGTGA TCCTGAGGTG GAGTATAGTG 
550
TTCTTGATGT CGAAACTGGT GAATGGCGGA TGTTGAGTCC ACCTCCTTAT 
600
AAGGTCTTTG AGGTAAGAAA ATCGGAGTGT GCGAATGGAT CGATCTACTG 
650
GTTACACAAA CCTACTGAGA GGGCTTGGAC AATACTAGCC TTGGATCTTC 
700
ACAAAGAAGA GTTACATAAC ATTTCAGTTC CTGATATGAG TGTCACGCAA 
750
GAAACCTTCC AAATAGTGAA CCTTGAGGAC CGCCTGGCCA TAGCCAATAC 
800
CTATACTAAG ACTGAATGGA AACTAGAGAT TTGGAGCATG GATACAGAAG 
850
TAGAAACATG GACCAAGACT TACTCCATAG ATTTAGAGAA TAGAGTTGCT 
900
TCCCGGGAAA GGCGGAACAG GTGGTTCACC CCGGTGTCGG TTTCTAAGCA 
950
AGGAAATATT GTCTTCTATG ATAATCACAA GAGACTTTTC AAAAATCAAC 
1000
CCTTCATACC CCCATCATCG CCGGAGAACC AAATGCCCCC TTAA
1050

>AT4G17780.1 longest ORF length:347
MEEEEKNPSS IYIVADLLED IFLRLPLKSI LISKSVSKRW RSILESKTFV 
50
ERRMSLQKKR KILAAYNCKC GWEPRLLPGS SQCKGNEEIV YLHCNAAQPS 
100
FTCDGLVCIL EPRWIDVLNP WTRQLRRYGF GFGTIFGVGS AFSPRHWAMG 
150
FGKDKVTGSY KVVKMCLISF SEICARDPEV EYSVLDVETG EWRMLSPPPY 
200
KVFEVRKSEC ANGSIYWLHK PTERAWTILA LDLHKEELHN ISVPDMSVTQ 
250
ETFQIVNLED RLAIANTYTK TEWKLEIWSM DTEVETWTKT YSIDLENRVA 
300
SRERRNRWFT PVSVSKQGNI VFYDNHKRLF KNQPFIPPSS PENQMPP
350