fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G17950 AT hook motif DNA-binding family protein (.1)

>AT4G17950.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRV, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI
Name Recognition sequence Cut positions
EcoRI G|AATTC 873
HindIII A|AGCTT 1008
StyI C|C[AT][AT]GG 409, 729
XhoI C|TCGAG 1152


Click here to view TAIR data

>AT4G17950.1 length:1320
ATGGATTCCA GAGAGATCCA CCACCAACAA CAGCAACAAC AACAACAACA 
50
ACAGCAGCAG CAGCAACAAC AGCAACATCT ACAACAACAG CAACAACCAC 
100
CGCCAGGGAT GTTAATGAGT CACCACAATT CCTACAATCG AAACCCTAAC 
150
GCCGCCGCCG CTGTTTTAAT GGGTCACAAC ACCTCCACAT CTCAAGCTAT 
200
GCATCAAAGA TTACCTTTTG GTGGTTCTAT GTCACCGCAT CAGCCTCAAC 
250
AACATCAGTA TCATCATCCT CAGCCTCAGC AACAGATAGA TCAGAAGACT 
300
CTTGAATCTC TTGGATTTGA TGGATCGCCT TCTTCTGTTG CCGCCACTCA 
350
ACAACATTCG ATGAGATTTG GGATCGACCA TCAACAGGTT AAGAAGAAAC 
400
GAGGTAGACC TAGGAAGTAT GCTGCTGATG GTGGTGGTGG TGGTGGTGGT 
450
GGTAGTAACA TTGCTCTTGG TTTGGCTCCT ACTTCGCCTC TTCCTTCTGC 
500
TTCTAATTCT TACGGTGGTG GAAATGAAGG AGGTGGTGGT GGTGATAGCG 
550
CCGGAGCTAA TGCTAACTCT TCCGATCCAC CTGCTAAACG GAACAGAGGA 
600
CGTCCTCCTG GCTCCGGTAA GAAGCAGCTC GATGCTTTAG GAGGAACAGG 
650
AGGAGTTGGG TTCACGCCTC ATGTCATTGA GGTTAAAACA GGAGAGGACA 
700
TAGCTACGAA GATATTGGCG TTTACGAACC AAGGGCCACG CGCAATCTGT 
750
ATTCTCTCAG CTACAGGAGC TGTAACTAAT GTGATGCTTC GTCAAGCTAA 
800
CAATAGCAAT CCTACTGGAA CTGTTAAGTA TGAGGGCCGA TTTGAAATCA 
850
TTTCTCTGTC AGGTTCTTTC TTGAATTCTG AGAGTAATGG TACTGTGACC 
900
AAAACTGGTA ACTTGAGTGT GTCGCTGGCT GGACACGAAG GCCGGATTGT 
950
GGGTGGATGT GTTGATGGAA TGCTAGTAGC TGGATCACAA GTCCAGGTCA 
1000
TTGTGGGAAG CTTTGTACCA GATGGAAGGA AGCAGAAACA AAGTGCGGGG 
1050
CGTGCTCAGA ATACTCCGGA GCCAGCTTCA GCACCAGCCA ATATGTTGAG 
1100
CTTTGGTGGT GTTGGTGGAC CGGGAAGCCC TCGATCTCAA GGACAACAAC 
1150
ACTCGAGCGA GTCATCAGAG GAAAACGAAA GTAATTCTCC GTTGCACCGT 
1200
AGAAGCAACA ACAACAACAG CAACAATCAT GGGATATTTG GAAACTCTAC 
1250
ACCTCAACCG CTTCACCAAA TTCCTATGCA GATGTACCAG AATCTCTGGC 
1300
CTGGCAACAG TCCTCAATAA 
1350

>AT4G17950.1 longest ORF length:439
MDSREIHHQQ QQQQQQQQQQ QQQQQHLQQQ QQPPPGMLMS HHNSYNRNPN 
50
AAAAVLMGHN TSTSQAMHQR LPFGGSMSPH QPQQHQYHHP QPQQQIDQKT 
100
LESLGFDGSP SSVAATQQHS MRFGIDHQQV KKKRGRPRKY AADGGGGGGG 
150
GSNIALGLAP TSPLPSASNS YGGGNEGGGG GDSAGANANS SDPPAKRNRG 
200
RPPGSGKKQL DALGGTGGVG FTPHVIEVKT GEDIATKILA FTNQGPRAIC 
250
ILSATGAVTN VMLRQANNSN PTGTVKYEGR FEIISLSGSF LNSESNGTVT 
300
KTGNLSVSLA GHEGRIVGGC VDGMLVAGSQ VQVIVGSFVP DGRKQKQSAG 
350
RAQNTPEPAS APANMLSFGG VGGPGSPRSQ GQQHSSESSE ENESNSPLHR 
400
RSNNNNSNNH GIFGNSTPQP LHQIPMQMYQ NLWPGNSPQ
450