fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G18450 Integrase-type DNA-binding superfamily protein (.1)

>AT4G18450.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccIII(BspMII), AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvrII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BspDI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BssHII, BstAPI, BstBI, BstEII, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, Cac8I, Cfr10I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HhaI, HinP1I, HindIII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, N.BstNBI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NlaIV, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PspOMI, PvuI, PvuII, RsrII, SacI, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TliI, Tsp45I, TspRI, Tth111I, XcmI, XhoI, XmaI
Name Recognition sequence Cut positions
AccI GT|[AC][TG]AC 189
AccII(FnuDII) CG|CG 457
AciI C|CGC 456, 595
AclI AA|CGTT 46, 414
AluI AG|CT 436, 484, 501, 520, 683
ApoI Pu|AATTPy 358, 495
AvaI C|PyCGPuG 302
AvaII G|G[AT]CC 197
BfaI C|TAG 23, 111, 159, 179
BsaJI C|CNNGG 349, 458
BsaWI [AT]|CCGG[AT] 554
BsiHKAI G[AT]GC[AT]|C 703
BslI CCNNNNN|NNGG 373
BsoBI C|PyCGPuG 302
Bsp1286I G[GAT]GC[CAT]|C 677, 703
BspHI T|CATGA 255
BsrI ACTGGN| 820
BssKI |CCNGG 200
BssSI C|TCGTG 716
BstF5I GGATGNN| 558, 660
BstNI CC|[AT]GG 200
BstUI CG|CG 457
BstYI Pu|GATCPy 35
BtgI C|CPuPyGG 349, 458
DdeI C|TNAG 681, 697
DpnI GA-CH3|TC 34, 87, 257, 578
DpnII |GATC 34, 87, 257, 578
Fnu4HI GC|NGC 363, 435, 456, 592
HincII GTPy|PuAC 189
HinfI G|ANTC 215, 282, 378, 713, 780
HpaII C|CGG 553
Hpy188I TCN|GA 64, 409, 576, 604, 708
Hpy99I CG[AT]CG| 190, 382
HpyCH4III ACN|GT 391, 510, 813, 831
HpyCH4IV A|CGT 45, 413, 572, 890
HpyCH4V TG|CA 311, 361, 424, 536, 804
MboI |GATC 34, 87, 257, 578
MseI T|TAA 263, 584, 630, 752
MspA1I C[AC]G|C[GT]G 458
MspI C|CGG 553
MwoI GCNNNNN|NNGC 432, 633
NlaIII CATG| 254, 285
PsiI TTA|TAA 515
PspGI |CC[AT]GG 200
PstI CTGCA|G 425
RsaI GT|AC 335, 474
SacII CCGC|GG 458
SalI G|TCGAC 189
Sau3AI |GATC 34, 87, 257, 578
Sau96I G|GNCC 197
ScrFI CC|NGG 200
SfcI C|TPuPyAG 425
Taqƒ¿I T|CGA 188, 219, 380, 504, 747
TfiI G|A[AT]TC 215, 282, 378, 780
TseI G|C[AT]GC 363, 435, 592
Tsp509I |AATT 56, 91, 357, 466, 494
XbaI T|CTAGA 112, 160
XmnI GAANN|NNTTC 170


Click here to view TAIR data

>AT4G18450.1 length:912
ATGGCTTTTG GCAATATCCA AGAACTAGAC GGCGAGATCC TAAAGAACGT 
50
TTGGGCGAAT TACATCGGAA CACCACAAAC CGATACAAGA TCAATTCAAG 
100
TTCCAGAAGT TTCTAGAACT TGGGAAGCGT TGCCTACCCT TGATGACATA 
150
CCAGAAGGTT CTAGAGAAAT GCTTCAAAGC CTAGATATGT CGACGGAGGA 
200
CCAGGAATGG ACAGAGATTC TCGATGCTAT TGCTTCTTTC CCAAACAAAA 
250
CCAATCATGA TCCATTAACC AACCCTACCA TTGATTCATG TTCTTTGTCT 
300
TCTCGGGTTT CTTGCAAAAC AAGAAAATAC AGGGGAGTAC GGAAGCGTCC 
350
GTGGGGGAAA TTTGCAGCCG AAATCAGGGA TTCGACGAGA AACGGTGTTA 
400
GGGTTTGGCT CGGAACGTTC CAAACTGCAG AGGAAGCAGC TATGGCTTAC 
450
GATAAAGCCG CGGTTAGAAT TAGAGGTACT CAAAAAGCTC ACACAAATTT 
500
TCAGCTCGAA ACAGTTATAA AAGCTATGGA AATGGATTGC AACCCAAACT 
550
ACTACCGGAT GAACAACTCA AATACGTCCG ATCCATTAAG AAGCAGCCGC 
600
AAAATCGGAT TGAGAACAGG AAAAGAGGCG GTTAAGGCTT ATGATGAAGT 
650
CGTTGATGGG ATGGTTGAAA ACCATTGTGC CCTTAGCTAT TGTTCAACTA 
700
AGGAGCACTC GGAGACTCGT GGTTTGCGTG GGAGTGAAGA AACTTGGTTC 
750
GATTTAAGAA AGAGACGAAG GAGTAATGAA GATTCTATGT GTCAAGAAGT 
800
TGAAATGCAG AAGACGGTTA CTGGAGAAGA GACAGTATGT GATGTGTTTG 
850
GTTTGTTTGA GTTTGAGGAT TTGGGAAGTG ATTATTTGGA GACGTTATTA 
900
TCTTCTTTTT GA
950

>AT4G18450.1 longest ORF length:303
MAFGNIQELD GEILKNVWAN YIGTPQTDTR SIQVPEVSRT WEALPTLDDI 
50
PEGSREMLQS LDMSTEDQEW TEILDAIASF PNKTNHDPLT NPTIDSCSLS 
100
SRVSCKTRKY RGVRKRPWGK FAAEIRDSTR NGVRVWLGTF QTAEEAAMAY 
150
DKAAVRIRGT QKAHTNFQLE TVIKAMEMDC NPNYYRMNNS NTSDPLRSSR 
200
KIGLRTGKEA VKAYDEVVDG MVENHCALSY CSTKEHSETR GLRGSEETWF 
250
DLRKRRRSNE DSMCQEVEMQ KTVTGEETVC DVFGLFEFED LGSDYLETLL 
300
SSF
350