fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G18960 AG AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2)

>AT4G18960.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SalI, SmaI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
HindIII A|AGCTT 140
SacI GAGCT|C 148, 415, 478


Click here to view TAIR data

>AT4G18960.1 length:759
ACGGCGTACC AATCGGAGCT AGGAGGAGAT TCCTCTCCCT TGAGGAAATC 
50
TGGGAGAGGA AAGATCGAAA TCAAACGGAT CGAGAACACA ACGAATCGTC 
100
AAGTCACTTT TTGCAAACGT AGAAATGGTT TGCTCAAGAA AGCTTACGAG 
150
CTCTCTGTTC TTTGTGATGC TGAAGTCGCA CTCATCGTCT TCTCTAGCCG 
200
TGGTCGTCTC TATGAGTACT CTAACAACAG TGTAAAAGGG ACTATTGAGA 
250
GGTACAAGAA GGCAATATCG GACAATTCTA ACACCGGATC GGTGGCAGAA 
300
ATTAATGCAC AGTATTATCA ACAAGAATCA GCCAAATTGC GTCAACAAAT 
350
AATCAGCATA CAAAACTCCA ACAGGCAATT GATGGGTGAG ACGATAGGGT 
400
CAATGTCTCC CAAAGAGCTC AGGAACTTGG AAGGCAGATT AGAGAGAAGT 
450
ATTACCCGAA TCCGATCCAA GAAGAATGAG CTCTTATTTT CTGAAATCGA 
500
CTACATGCAG AAAAGAGAAG TTGATTTGCA TAACGATAAC CAGATTCTTC 
550
GTGCAAAGAT AGCTGAAAAT GAGAGGAACA ATCCGAGTAT AAGTCTAATG 
600
CCAGGAGGAT CTAACTACGA GCAGCTTATG CCACCACCTC AAACGCAATC 
650
TCAACCGTTT GATTCACGGA ATTATTTCCA AGTCGCGGCA TTGCAACCTA 
700
ACAATCACCA TTACTCATCC GCGGGTCGCC AAGACCAAAC CGCTCTCCAG 
750
TTAGTGTAA
800

>AT4G18960.1 longest ORF length:252
TAYQSELGGD SSPLRKSGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE 
50
LSVLCDAEVA LIVFSSRGRL YEYSNNSVKG TIERYKKAIS DNSNTGSVAE 
100
INAQYYQQES AKLRQQIISI QNSNRQLMGE TIGSMSPKEL RNLEGRLERS 
150
ITRIRSKKNE LLFSEIDYMQ KREVDLHNDN QILRAKIAEN ERNNPSISLM 
200
PGGSNYEQLM PPPQTQSQPF DSRNYFQVAA LQPNNHHYSS AGRQDQTALQ 
250
LV
300