fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G21050 AtDof4,4 Dof-type zinc finger domain-containing protein (.1)

>AT4G21050.1 CDS map

>>Show genomic map




Uncut enzymes: AatII, Acc65I, AccI, AccIII(BspMII), AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AvaI, AvaII, AvrII, BaeI, BalI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BfaI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, Bsp1286I, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssKI, BssSI, BstAPI, BstEII, BstF5I, BstNI, BstXI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cac8I, Cfr10I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, Fnu4HI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HincII, HpaI, HpaII, HphI, Hpy99I, HpyCH4IV, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MspA1I, MspI, N.BstNBI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsaI, RsrII, SacI, SacII, SalI, SapI, Sau96I, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TliI, TseI, Tth111I, XbaI, XhoI, XmaI
Name Recognition sequence Cut positions
AccII(FnuDII) CG|CG 138
AciI C|CGC 137
AluI AG|CT 184, 600
ApoI Pu|AATTPy 420
AseI AT|TAAT 289
BamHI G|GATCC 505
BsaJI C|CNNGG 79
BslI CCNNNNN|NNGG 207, 550
BstBI TT|CGAA 443
BstUI CG|CG 138
BstYI Pu|GATCPy 505
DdeI C|TNAG 100, 259, 396, 458
DpnI GA-CH3|TC 242, 336, 504
DpnII |GATC 242, 336, 504
HhaI GCG|C 139
HinP1I G|CGC 139
HindIII A|AGCTT 601
HinfI G|ANTC 87, 129, 173, 474, 624
Hpy188I TCN|GA 90, 233, 258, 304, 377
HpyCH4III ACN|GT 124, 157, 363
HpyCH4V TG|CA 149, 578
MboI |GATC 242, 336, 504
MseI T|TAA 188, 288
MslI CAPyNN|NNPuTG 72
MwoI GCNNNNN|NNGC 148
NlaIII CATG| 176, 407, 620
NlaIV GGN|NCC 505, 594
PflMI CCANNNN|NTGG 207
Sau3AI |GATC 242, 336, 504
SfcI C|TPuPyAG 123
SmlI C|TPyPuAG 314
StyI C|C[AT][AT]GG 79
Taqƒ¿I T|CGA 251, 334, 442
TfiI G|A[AT]TC 87, 129, 474, 624
Tsp45I |GT[CG]AC 65
Tsp509I |AATT 286, 419, 430
TspRI NNCA[CG]TGNN| 127
XcmI CCANNNNN|NNNNTGG 549
XmnI GAANN|NNTTC 16, 479


Click here to view TAIR data

>AT4G21050.1 length:633
ATGGATAACT TGAATGTTTT CGCTAATGAA GACAATCAAG TGAATGGTTT 
50
GAAGCGTCCA CCCCCGTCAC GAGTGTGTCC AAGGTGTGAT TCTGATAACA 
100
CTAAGTTTTG CTTTTACAAC AACTACAGTG AATCTCAACC GCGCTACTTT 
150
TGCAAAAACT GTCGTAGATA TTGGACTCAT GGTGGAGCTT TAAGAAACAT 
200
ACCAGTTGGT GGAAGTTGTC GTAAACCAAA GCGTCTGAAG GTAGATCAAT 
250
CTTCGATTTC TGAGATGGTT TCTGTTGAGA ACCAACCAAT TAATCATCAA 
300
TCTTTCAGAC AAACTCAAGA AAACAATGAG TTTGTTCGAT CTTTTGACGC 
350
TTCTTCTTCT GCTACTGTTA CTGCCGTTCC GAACCATTTT GGTTATCTAA 
400
GTGAACTTCA TGGTGTAACA AATTTGCTTC CAATTCAAAG TTTTCGAACA 
450
ATGGACTGCT TAGATTTCGG TGATGAATCT TTTCAACAAG GTTATTACGA 
500
TGTTGGATCC AATGATTTGA TTGATAACCC TTTGATAAAC CAATCCATCG 
550
GTGGGTATGT TGATAATCTT ACAAGTTATT GCATAAATCA AGTGGAACCA 
600
AAGCTTCAAC CACGCTATGA ACATGAATCA TAA
650

>AT4G21050.1 longest ORF length:210
MDNLNVFANE DNQVNGLKRP PPSRVCPRCD SDNTKFCFYN NYSESQPRYF 
50
CKNCRRYWTH GGALRNIPVG GSCRKPKRLK VDQSSISEMV SVENQPINHQ 
100
SFRQTQENNE FVRSFDASSS ATVTAVPNHF GYLSELHGVT NLLPIQSFRT 
150
MDCLDFGDES FQQGYYDVGS NDLIDNPLIN QSIGGYVDNL TSYCINQVEP 
200
KLQPRYEHES 
250