fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G21750 ATML1 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)

>AT4G21750.1 CDS map

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Uncut enzymes: AatII, Acc65I, AfeI, AflII, AhdI, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaI, AvrII, BaeI, BanI, BanII, BbsI, BbvI, BcgI, BciVI, BglII, BmrI, BpmI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, Bsp1286I, BspDI, BspMI, BspT107I(HgiCI), BsrGI, BssHII, BstAPI, BstEII, BstZ17I, BtrI, BtsI, ClaI, DraI, DraIII, EagI, EarI, EciI, EcoNI, EcoRI, EcoRV, FauI, FokI, FseI, HgaI, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MspA1I, NaeI, , NarI, NgoMIV, NheI, NotI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PleI, PmeI, PmlI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SpeI, SspI, StuI, SwaI, TliI, XhoI, XmaI
Name Recognition sequence Cut positions
AccI GT|[AC][TG]AC 957, 1599
AccII(FnuDII) CG|CG 287, 533, 642, 1567
AccIII(BspMII) T|CCGGA 1983, 2008
AciI C|CGC 1139, 1426, 1683, 2190, 2262
AclI AA|CGTT 1406, 1960
AflIII A|CPuPyGT 14, 1361, 1880
AgeI A|CCGGT 1384
AluI AG|CT 153, 225, 279, 291, 296, 402, 475, 562, 615, 787, 807, 943, 1390, 1547, 1708, 1951
AlwNI CAGNNN|CTG 382
AvaII G|G[AT]CC 468, 915, 1918
BalI TGG|CCA 1457
BamHI G|GATCC 1609, 1700
BbvCI CC|TCAGC 614
BclI T|GATCA 2234
BfaI C|TAG 227, 903, 1020, 1058, 1251, 1526, 2037
BglI GCCNNNN|NGGC 2268
BlpI GC|TNAGC 295
BsaAI PyAC|GTPu 574
BsaBI GATNN|NNATC 167, 1010
BsaHI GPu|CGPyC 48
BsaJI C|CNNGG 131, 1310, 1454, 1825
BsaWI [AT]|CCGG[AT] 1384, 1558, 1983, 2008
BslI CCNNNNN|NNGG 95, 462
BspEI T|CCGGA 1983, 2008
BspHI T|CATGA 971, 1628
BsrBI GAG|CGG 1438, 2251
BsrDI GCAATGNN| 801
BsrFI Pu|CCGGPy 1384
BsrI ACTGGN| 697, 829, 1075, 2128
BssKI |CCNGG 82, 1585, 1653, 1665, 1824
BssSI C|TCGTG 1154
BstBI TT|CGAA 19
BstF5I GGATGNN| 433, 1006, 1216, 1342, 1648, 2029
BstNI CC|[AT]GG 1585, 1665, 1824
BstUI CG|CG 287, 533, 642, 1567
BstXI CCANNNNN|NTGG 1454
BstYI Pu|GATCPy 162, 1609, 1700
Bsu36I CC|TNAGG 1502
BtgI C|CPuPyGG 131, 1454
Cac8I GCN|NGC 290, 647, 1443, 1459, 1517, 1581, 2272
Cfr10I [AG]|CCGG[TC] 1384
DdeI C|TNAG 109, 282, 294, 299, 438, 613, 757, 1233, 1501, 1677, 1734, 1865, 1968
DpnI GA-CH3|TC 161, 514, 653, 833, 936, 1246, 1347, 1478, 1608, 1649, 1699, 1820, 1885, 1979, 2233
DpnII |GATC 161, 514, 653, 833, 936, 1246, 1347, 1478, 1608, 1649, 1699, 1820, 1885, 1979, 2233
DrdI GACNNNN|NNGTC 1596, 1624
EaeI Py|GGCCPu 1457
EcoO109I PuG|GNCCPy 1919
Fnu4HI GC|NGC 474, 564, 724, 795, 1139, 1439, 1683, 2262
FspI TGC|GCA 1578
HaeII PuGCGC|Py 1681
HaeIII GG|CC 1456, 2269
HhaI GCG|C 117, 643, 1566, 1577, 1680
HinP1I G|CGC 117, 643, 1566, 1577, 1680
HincII GTPy|PuAC 1572, 1599, 2176
HindIII A|AGCTT 297, 944
HinfI G|ANTC 21, 137, 218, 231, 284, 550, 869, 954, 974, 995, 1010, 1055, 1283, 1496, 1561, 1849, 2011, 2178
HpaII C|CGG 81, 114, 470, 1383, 1469, 1557, 1652, 1982, 2007, 2024, 2076
Hpy188I TCN|GA 60, 390, 406, 756, 939, 1244, 1280, 1611, 1735, 2165, 2231
Hpy99I CG[AT]CG| 497, 1613, 2276
HpyCH4III ACN|GT 199, 460, 960, 1177, 1189, 1195, 1370, 2154, 2220, 2244
HpyCH4IV A|CGT 573, 896, 1405, 1617, 1959
HpyCH4V TG|CA 793, 1104, 1293, 1399, 2240
MboI |GATC 161, 514, 653, 833, 936, 1246, 1347, 1478, 1608, 1649, 1699, 1820, 1885, 1979, 2233
MscI TGG|CCA 1457
MseI T|TAA 509, 587, 1377, 2256
MslI CAPyNN|NNPuTG 346
MspI C|CGG 81, 114, 470, 1383, 1469, 1557, 1652, 1982, 2007, 2024, 2076
MwoI GCNNNNN|NNGC 295, 564, 795, 1398, 1575, 1806, 2268
N.BstNBI GAGTCNNNN|N 236, 289, 959, 1501, 1566, 1854
NciI CC|[CG]GG 82, 1653
NcoI C|CATGG 131, 1454
NdeI CA|TATG 34
NlaIII CATG| 13, 130, 359, 450, 970, 1317, 1360, 1453, 1516, 1580, 1627, 1642, 1879
NlaIV GGN|NCC 86, 326, 1609, 1700, 1918, 2074, 2281
NruI TCG|CGA 288
NspI PuCATG|Py 14, 451, 1361, 1517, 1581, 1880
PciI A|CATGT 14, 1361, 1880
PflFI GACN|NNGTC 111, 1241
PflMI CCANNNN|NTGG 462
PpuMI PuG|G[AT]CCPy 1919
PspGI |CC[AT]GG 1585, 1665, 1824
RsaI GT|AC 424, 1174, 1554, 1902
SalI G|TCGAC 1599
Sau3AI |GATC 161, 514, 653, 833, 936, 1246, 1347, 1478, 1608, 1649, 1699, 1820, 1885, 1979, 2233
Sau96I G|GNCC 468, 915, 1918
ScrFI CC|NGG 82, 1585, 1653, 1665, 1824
SfcI C|TPuPyAG 479, 1706, 2219
SmlI C|TPyPuAG 1749
SnaBI TAC|GTA 574
SphI GCATG|C 1517, 1581
StyI C|C[AT][AT]GG 131, 1310, 1454
Taqƒ¿I T|CGA 18, 39, 102, 495, 516, 746, 1598, 1725, 1846, 2247
TfiI G|A[AT]TC 21, 137, 218, 550, 869, 974, 995, 1010, 1283, 2011
TseI G|C[AT]GC 474, 564, 724, 795
Tsp45I |GT[CG]AC 126, 202, 1192, 1314
Tsp509I |AATT 596, 857, 910, 1290
TspRI NNCA[CG]TGNN| 697, 1192, 2068, 2245
Tth111I GACN|NNGTC 111, 1241
XbaI T|CTAGA 1059
XcmI CCANNNNN|NNNNTGG 1784
XmnI GAANN|NNTTC 155, 308


Click here to view TAIR data

>AT4G21750.1 length:2289
ATGTATCATC CAAACATGTT CGAATCTCAT CATCATATGT TCGATATGAC 
50
GCCGAAAAAC TCCGAAAACG ATTTGGGTAT CACCGGGAGC CACGAAGAGG 
100
ATTTCGAGAC TAAGTCCGGC GCAGAAGTCA CCATGGAGAA TCCTTTAGAA 
150
GAAGAGCTTC AAGATCCTAA TCAGCGTCCC AACAAAAAGA AGCGTTACCA 
200
CCGTCACACA CAACGCCAGA TTCAAGAGCT AGAGTCGTTC TTCAAGGAAT 
250
GTCCTCATCC AGACGATAAG CAAAGAAAGG AGCTGAGTCG CGAGCTAAGC 
300
TTAGAACCTC TTCAAGTCAA GTTTTGGTTC CAAAACAAAC GCACTCAAAT 
350
GAAGGCACAA CATGAGAGGC ACGAGAACCA GATACTGAAG TCAGAAAATG 
400
ACAAGCTCCG AGCAGAGAAC AATAGGTACA AGGATGCTCT AAGCAACGCA 
450
ACATGCCCAA ACTGTGGTGG TCCGGCAGCT ATAGGAGAAA TGTCCTTCGA 
500
CGAACAGCAT TTAAGGATCG AAAATGCTCG TTTACGCGAA GAGATTGACA 
550
GAATCTCTGC CATAGCTGCT AAATACGTAG GGAAGCCTTT AATGGCTAAT 
600
TCCTCTTCTT TCCCTCAGCT CTCTTCTTCA CACCACATTC CCTCGCGCTC 
650
GCTTGATCTT GAAGTTGGGA ACTTTGGGAA CAATAACAAT AGCCACACTG 
700
GTTTCGTTGG GGAAATGTTT GGAAGCAGCG ACATTTTGAG GTCGGTTTCG 
750
ATACCTTCTG AGGCTGATAA GCCTATGATT GTTGAGTTAG CTGTTGCAGC 
800
AATGGAAGAG CTTGTGAGAA TGGCTCAAAC TGGTGATCCC TTATGGGTTT 
850
CAAGCGATAA TTCTGTTGAG ATTCTCAATG AAGAAGAGTA TTTTAGGACG 
900
TTTCCTAGAG GAATTGGACC GAAACCTATC GGTTTGAGAT CAGAAGCTTC 
950
AAGAGAGTCT ACTGTTGTTA TCATGAATCA TATCAATCTC ATTGAGATTC 
1000
TAATGGATGT GAATCAATGG TCTAGTGTGT TCTGCGGGAT TGTATCAAGA 
1050
GCATTGACTC TAGAAGTTCT CTCAACTGGC GTAGCAGGGA ACTACAATGG 
1100
GGCATTGCAA GTGATGACAG CAGAGTTCCA AGTCCCATCG CCGCTTGTCC 
1150
CTACTCGTGA GAACTACTTT GTAAGGTACT GTAAACAGCA CAGTGACGGT 
1200
ATTTGGGCGG TTGTGGATGT CTCTTTGGAC AGCCTAAGAC CAAGTCCGAT 
1250
CACTAGAAGC AGAAGAAGAC CCTCTGGTTG TCTGATTCAA GAATTGCAGA 
1300
ATGGTTACTC CAAGGTGACA TGGGTAGAGC ATATTGAGGT GGATGATAGA 
1350
TCGGTTCACA ACATGTATAA ACCGTTGGTT AATACCGGTT TAGCTTTCGG 
1400
TGCAAAACGT TGGGTGGCTA CACTTGACCG CCAATGTGAG CGGCTCGCCA 
1450
GTTCCATGGC CAGCAACATT CCGGCTTGTG ATCTTTCCGT GATAACGAGT 
1500
CCTGAGGGGA GAAAGAGCAT GCTGAAACTA GCGGAGAGAA TGGTGATGAG 
1550
CTTCTGTACC GGAGTCGGCG CGTCAACTGC GCATGCCTGG ACTACATTGT 
1600
CGACCACAGG ATCCGACGAC GTTCGGGTCA TGACCCGAAA GAGCATGGAT 
1650
GATCCGGGAA GACCTCCAGG CATCGTTCTC AGCGCCGCTA CTTCTTTCTG 
1700
GATCCCTGTA GCTCCAAAAC GAGTGTTCGA TTTTCTCAGA GATGAAAACT 
1750
CAAGAAGCGA GTGGGATATA CTTTCCAATG GAGGCTTGGT TCAAGAAATG 
1800
GCTCATATCG CAAATGGTCG TGATCCTGGG AATAGTGTCT CCTTGCTTCG 
1850
AGTCAATAGT GGGAACTCAG GGCAGAGCAA CATGTTGATC TTACAAGAAA 
1900
GTTGTACGGA CGCATCAGGG TCCTATGTGA TATACGCACC AGTTGATATA 
1950
ATAGCTATGA ACGTTGTCCT GAGTGGTGGT GATCCGGATT ATGTCGCTTT 
2000
GTTACCATCC GGATTCGCTA TTTTGCCGGA TGGCTCTGCT AGAGGAGGAG 
2050
GAGGTAGTGC TAATGCCAGT GCTGGAGCCG GAGTTGAAGG AGGAGGAGAG 
2100
GGGAATAATC TTGAAGTGGT TACTACTACT GGGAGTTGTG GCGGTTCACT 
2150
ACTCACAGTT GCGTTTCAGA TACTTGTTGA CTCTGTTCCT ACCGCTAAAC 
2200
TCTCTCTCGG TTCAGTTGCT ACAGTCAATA GTCTGATCAA ATGCACTGTC 
2250
GAGCGGATTA AAGCCGCTCT GGCCTGCGAC GGAGCCTAA
2300

>AT4G21750.1 longest ORF length:762
MYHPNMFESH HHMFDMTPKN SENDLGITGS HEEDFETKSG AEVTMENPLE 
50
EELQDPNQRP NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRELS 
100
LEPLQVKFWF QNKRTQMKAQ HERHENQILK SENDKLRAEN NRYKDALSNA 
150
TCPNCGGPAA IGEMSFDEQH LRIENARLRE EIDRISAIAA KYVGKPLMAN 
200
SSSFPQLSSS HHIPSRSLDL EVGNFGNNNN SHTGFVGEMF GSSDILRSVS 
250
IPSEADKPMI VELAVAAMEE LVRMAQTGDP LWVSSDNSVE ILNEEEYFRT 
300
FPRGIGPKPI GLRSEASRES TVVIMNHINL IEILMDVNQW SSVFCGIVSR 
350
ALTLEVLSTG VAGNYNGALQ VMTAEFQVPS PLVPTRENYF VRYCKQHSDG 
400
IWAVVDVSLD SLRPSPITRS RRRPSGCLIQ ELQNGYSKVT WVEHIEVDDR 
450
SVHNMYKPLV NTGLAFGAKR WVATLDRQCE RLASSMASNI PACDLSVITS 
500
PEGRKSMLKL AERMVMSFCT GVGASTAHAW TTLSTTGSDD VRVMTRKSMD 
550
DPGRPPGIVL SAATSFWIPV APKRVFDFLR DENSRSEWDI LSNGGLVQEM 
600
AHIANGRDPG NSVSLLRVNS GNSGQSNMLI LQESCTDASG SYVIYAPVDI 
650
IAMNVVLSGG DPDYVALLPS GFAILPDGSA RGGGGSANAS AGAGVEGGGE 
700
GNNLEVVTTT GSCGGSLLTV AFQILVDSVP TAKLSLGSVA TVNSLIKCTV 
750
ERIKAALACD GA
800