fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G23980 ARF9 auxin response factor 9 (.1.2)

>AT4G23980.2 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NheI, NotI, PacI, PstI, PvuII, SmaI, SpeI, XhoI
Name Recognition sequence Cut positions
NcoI C|CATGG 381, 1012, 1756
NdeI CA|TATG 1794
SacI GAGCT|C 1134, 1639
SalI G|TCGAC 145
StyI C|C[AT][AT]GG 381, 772, 1012, 1571, 1756
XbaI T|CTAGA 810


Click here to view TAIR data

>AT4G23980.2 length:1911
ATGGCAAATC GCGGAGGTGA ATATCTGTAC GATGAGTTAT GGAAATTATG 
50
CGCGGGACCT CTTGTTGATG TTCCTCAAGC TCAAGAAAGA GTTTATTATT 
100
TTCCTCAAGG TCACATGGAA CAACTCGAAG CGTCAACGCA ACAAGTCGAC 
150
TTAAATACGA TGAAGCCTCT TTTTGTTCTT CCTCCTAAGA TTCTCTGCAA 
200
TGTTATGAAC GTTAGTCTTC AGGCGGAGAA AGATACGGAT GAGGTCTATG 
250
CTCAGATTAC TTTGATCCCT GTTGGAACTG AAGTTGATGA ACCTATGAGT 
300
CCTGATCCCT CTCCTCCTGA GTTGCAAAGG CCGAAAGTTC ACTCTTTCAG 
350
CAAGGTTTTG ACAGCGTCTG ATACAAGCAC CCATGGTGGC TTTTCTGTTC 
400
TAAGGAAACA TGCCACGGAA TGTCTTCCTC CGCTGGATAT GACTCAGCAA 
450
ACCCCGACCC AGGAGTTAGT AGCCGAAGAT GTGCACGGTT ATCAGTGGAA 
500
ATTCAAGCAT ATTTTTAGAG GCCAACCACG GAGGCATCTA TTGACGACAG 
550
GGTGGAGCAC CTTTGTTACA TCAAAGAGAT TGGTTGCTGG GGACACCTTT 
600
GTATTCCTGA GAGGGGAGAA CGGAGAGTTG CGAGTTGGAG TCAGACGTGC 
650
TAATCTTCAA CAGAGCAGTA TGCCTTCATC CGTTATATCA AGTCATAGTA 
700
TGCATCTGGG AGTGCTTGCT ACTGCACGCC ATGCTACTCA AACGAAAACT 
750
ATGTTCATTG TATACTATAA ACCAAGGACA AGCCAATTCA TCATTAGCTT 
800
GAACAAATAT CTAGAAGCCA TGAGCAATAA GTTCTCTGTA GGGATGAGAT 
850
TTAAGATGCG TTTTGAGGGA GAGGATTCCC CTGAAAGAAG ATATTCTGGC 
900
ACGGTTATTG GTGTGAAAGA CTGCTCCCCT CACTGGAAAG ACTCAAAATG 
950
GCGATGCTTA GAAGTTCATT GGGATGAGCC TGCATCGATT TCAAGACCCA 
1000
ATAAGGTTTC ACCATGGGAA ATTGAACCGT TTGTAAATTC AGAAAACGTT 
1050
CCCAAATCAG TTATGCTGAA GAACAAAAGG CCCCGTCAAG TTAGTGAAGT 
1100
ATCTGCACTT GGCATAACAG CTTCAAACCT TTGGAGCTCT GTTTTGACGC 
1150
AACCCCATGA GTTTGCACAA TCGTGCATCA CCTCACAGTG GAGTTCTCCT 
1200
CAGCAATGTC ATCGTGATGC AAATGAGGAT GCTAAGAAAT CTGACTGGCT 
1250
AAATAACTCT TACTCTGTGT CAAATGTAGC AAAAGACTCA ACACTGAACG 
1300
ACCAAATGGT TTCCCCAGTC GAGCAGAAGA AGCCTGAGAC AACCGCTAAT 
1350
TATAGATTAT TTGGAATTGA TCTGATGAGT TCCTCCCTAG CGGTTCCTGA 
1400
GGAGAAAACT GCACCCATGC GACCAATCAA CATATCCAAA CCGACTATGG 
1450
ACAGCCACTC AGACCCAAAA TCAGAGATTT CAAAAGTATC AGAAGAGAAA 
1500
AAGCAGGAAC CTGCGGAGGG ATCACCAAAA GAGGTCCAAA GCAAGCAAAG 
1550
CAGTTCTACA AGAAGCCGTA CCAAGGTGCA GATGCAAGGC GTACCTGTGG 
1600
GCAGGGCTGT GGATTTAAAT GCGCTAAAGG GGTACAACGA GCTCATAGAT 
1650
GACATTGAGA AGCTGTTTGA CATAAAAGGG GAACTGCGGA GTCGCAATCA 
1700
ATGGGAAATA GTGTTCACAG ACGATGAGGG AGATATGATG CTTGTCGGTG 
1750
ATGACCCATG GCCTGAGTTC TGCAACATGG TGAAGAGAAT ATTCATATGG 
1800
TCGAAAGAGG AAGTGAAGAA AATGACGCCT GGGAACCAAC TCCGGATGCT 
1850
GTTAAGGGAA GTTGAAACAA CACTAACAAC AACTTCCAAA ACAGATAATC 
1900
ATTCCAACTA A
1950

>AT4G23980.2 longest ORF length:636
MANRGGEYLY DELWKLCAGP LVDVPQAQER VYYFPQGHME QLEASTQQVD 
50
LNTMKPLFVL PPKILCNVMN VSLQAEKDTD EVYAQITLIP VGTEVDEPMS 
100
PDPSPPELQR PKVHSFSKVL TASDTSTHGG FSVLRKHATE CLPPLDMTQQ 
150
TPTQELVAED VHGYQWKFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDTF 
200
VFLRGENGEL RVGVRRANLQ QSSMPSSVIS SHSMHLGVLA TARHATQTKT 
250
MFIVYYKPRT SQFIISLNKY LEAMSNKFSV GMRFKMRFEG EDSPERRYSG 
300
TVIGVKDCSP HWKDSKWRCL EVHWDEPASI SRPNKVSPWE IEPFVNSENV 
350
PKSVMLKNKR PRQVSEVSAL GITASNLWSS VLTQPHEFAQ SCITSQWSSP 
400
QQCHRDANED AKKSDWLNNS YSVSNVAKDS TLNDQMVSPV EQKKPETTAN 
450
YRLFGIDLMS SSLAVPEEKT APMRPINISK PTMDSHSDPK SEISKVSEEK 
500
KQEPAEGSPK EVQSKQSSST RSRTKVQMQG VPVGRAVDLN ALKGYNELID 
550
DIEKLFDIKG ELRSRNQWEI VFTDDEGDMM LVGDDPWPEF CNMVKRIFIW 
600
SKEEVKKMTP GNQLRMLLRE VETTLTTTSK TDNHSN
650