fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G24060 AtDof4,6 Dof-type zinc finger DNA-binding family protein (.1)

>AT4G24060.1 CDS map

>>Show genomic map




Uncut enzymes: AatII, Acc65I, AccII(FnuDII), AccIII(BspMII), AclI, AfeI, AflII, AflIII, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AvaI, AvrII, BaeI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BlpI, BmrI, BpmI, BsaAI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, Bsp1286I, BspDI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BssHII, BssKI, BssSI, BstAPI, BstBI, BstEII, BstNI, BstUI, BstZ17I, Bsu36I, BtrI, BtsI, Cac8I, ClaI, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HindIII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, N.BstNBI, NaeI, , NarI, NciI, NdeI, NgoMIV, NheI, NlaIV, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, RsaI, RsrII, SacI, SacII, SapI, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TliI, Tsp45I, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AccI GT|[AC][TG]AC 928
AciI C|CGC 74, 80, 86, 95
AgeI A|CCGGT 439
AluI AG|CT 151, 373, 970
ApoI Pu|AATTPy 454, 657, 666
AseI AT|TAAT 922, 934
AvaII G|G[AT]CC 259, 514
BalI TGG|CCA 16
BclI T|GATCA 396
BfaI C|TAG 767
BglII A|GATCT 319, 477
BsaBI GATNN|NNATC 788
BsaJI C|CNNGG 41, 608
BsaWI [AT]|CCGG[AT] 439
BslI CCNNNNN|NNGG 114, 294, 711
BspHI T|CATGA 413
BsrFI Pu|CCGGPy 439
BsrI ACTGGN| 997
BstF5I GGATGNN| 507, 1002
BstXI CCANNNNN|NTGG 543
BstYI Pu|GATCPy 319, 477, 627, 702
BtgI C|CPuPyGG 608
Cfr10I [AG]|CCGG[TC] 439
DdeI C|TNAG 10, 276
DpnI GA-CH3|TC 146, 318, 395, 476, 626, 701, 731, 782, 1014
DpnII |GATC 146, 318, 395, 476, 626, 701, 731, 782, 1014
EaeI Py|GGCCPu 16
EcoRI G|AATTC 657
Fnu4HI GC|NGC 74, 98, 221, 969
HaeIII GG|CC 15, 135
HincII GTPy|PuAC 928
HinfI G|ANTC 360
HpaII C|CGG 438
Hpy188I TCN|GA 164, 336, 357, 393, 944
Hpy99I CG[AT]CG| 109
HpyCH4III ACN|GT 107, 160
HpyCH4IV A|CGT 977
HpyCH4V TG|CA 236, 726, 746, 967
MboI |GATC 146, 318, 395, 476, 626, 701, 731, 782, 1014
MscI TGG|CCA 16
MseI T|TAA 921, 933
MslI CAPyNN|NNPuTG 418, 797
MspA1I C[AC]G|C[GT]G 971
MspI C|CGG 438
MwoI GCNNNNN|NNGC 80, 95
NcoI C|CATGG 608
NlaIII CATG| 63, 412, 418, 500, 597, 607, 676, 806, 1017
NspI PuCATG|Py 64, 419
PvuII CAG|CTG 971
SalI G|TCGAC 928
Sau3AI |GATC 146, 318, 395, 476, 626, 701, 731, 782, 1014
Sau96I G|GNCC 259, 514
SmlI C|TPyPuAG 303, 460
StyI C|C[AT][AT]GG 41, 608
Taqƒ¿I T|CGA 927
TfiI G|A[AT]TC 360
TseI G|C[AT]GC 98, 221, 969
Tsp509I |AATT 206, 453, 482, 656, 665, 891, 919
TspRI NNCA[CG]TGNN| 14, 526, 765


Click here to view TAIR data

>AT4G24060.1 length:1029
ATGGATACGG CTCAGTGGCC ACAGGAGATT GTAGTGAAGC CCTTGGAAGA 
50
AATAGTAACA AACACATGCC CAAAGCCGCA ACCGCAACCG CTTCAACCGC 
100
AGCAGCCACC GTCGGTGGGT GGAGAGAGGA AGGCAAGGCC AGAAAAGGAT 
150
CAAGCTGTAA ACTGTCCGAG ATGTAACTCA ACCAACACAA AGTTTTGTTA 
200
CTACAACAAT TATAGTTTGA CGCAGCCAAG ATACTTCTGC AAAGGTTGTA 
250
GAAGGTATTG GACCGAAGGC GGTTCGCTTA GGAACATTCC TGTTGGCGGT 
300
GGCTCAAGAA AGAACAAGAG ATCTCACTCT TCTTCTTCTG ATATTAGTAA 
350
CAATCACTCG GATTCTACAC AACCAGCTAC AAAGAAGCAT CTCTCTGATC 
400
ATCACCACCA CCTCATGAGC ATGTCTCAAC AAGGTTTGAC CGGTCAAAAC 
450
CCTAAATTCC TTGAGACGAC CCAACAAGAT CTCAATTTAG GTTTTTCACC 
500
ACATGGGATG ATTAGGACCA ACTTCACTGA CCTCATCCAC AACATTGGCA 
550
ACAACACCAA CAAGAGCAAC AACAATAACA ATCCATTGAT TGTTTCTTCA 
600
TGTTCTGCCA TGGCTACTTC TTCTCTGGAT CTCATAAGAA ACAATAGTAA 
650
CAATGGGAAT TCTTCAAATT CTTCCTTCAT GGGATTTCCA GTTCATAATC 
700
AAGATCCAGC ATCAGGAGGG TTTTCAATGC AAGATCATTA CAAGCCTTGC 
750
AACACAAACA CCACACTGCT AGGGTTTTCA TTAGATCATC ATCATAATAA 
800
TGGATTTCAT GGAGGGTTTC AAGGAGGAGA AGAAGGTGGA GAAGGTGGTG 
850
ATGATGTGAA TGGAAGGCAC TTGTTTCCTT TTGAGGATTT GAAATTGCCA 
900
GTTTCTTCTT CATCAGCAAC AATTAATGTC GACATTAATG AACATCAGAA 
950
GCGAGGAAGC GGTAGTGATG CAGCTGCTAC GTCTGGTGGG TATTGGACTG 
1000
GGATGTTGAG TGGAGGATCA TGGTGCTAA
1050

>AT4G24060.1 longest ORF length:342
MDTAQWPQEI VVKPLEEIVT NTCPKPQPQP LQPQQPPSVG GERKARPEKD 
50
QAVNCPRCNS TNTKFCYYNN YSLTQPRYFC KGCRRYWTEG GSLRNIPVGG 
100
GSRKNKRSHS SSSDISNNHS DSTQPATKKH LSDHHHHLMS MSQQGLTGQN 
150
PKFLETTQQD LNLGFSPHGM IRTNFTDLIH NIGNNTNKSN NNNNPLIVSS 
200
CSAMATSSLD LIRNNSNNGN SSNSSFMGFP VHNQDPASGG FSMQDHYKPC 
250
NTNTTLLGFS LDHHHNNGFH GGFQGGEEGG EGGDDVNGRH LFPFEDLKLP 
300
VSSSSATINV DINEHQKRGS GSDAAATSGG YWTGMLSGGS WC
350