fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G24150 ATGRF8 growth-regulating factor 8 (.1)

>AT4G24150.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccII(FnuDII), AccIII(BspMII), AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaHI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstUI, BstZ17I, Bsu36I, BtrI, ClaI, DraI, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HindIII, HpaI, HphI, Hpy99I, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, N.BstNBI, NaeI, , NarI, NgoMIV, NheI, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PvuI, RsrII, SacII, SapI, SbfI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SphI, SspI, StuI, SwaI, TliI, Tth111I, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AccI GT|[AC][TG]AC 28, 97, 1165
AciI C|CGC 342
AluI AG|CT 114, 395, 442, 454, 468, 528, 687, 915, 1078, 1086, 1110, 1172, 1277, 1457, 1469, 1475
AlwNI CAGNNN|CTG 656
ApoI Pu|AATTPy 177, 1140
AvaII G|G[AT]CC 1359, 1392
BanII GPuGCPy|C 396, 1111
BclI T|GATCA 795, 1005
BfaI C|TAG 297, 777, 909, 1440, 1452
BsaAI PyAC|GTPu 25
BsaBI GATNN|NNATC 1133
BsaJI C|CNNGG 736
BsiHKAI G[AT]GC[AT]|C 396, 774, 1111
BsiWI C|GTACG 892
BslI CCNNNNN|NNGG 578
Bsp1286I G[GAT]GC[CAT]|C 396, 774, 1111
BsrFI Pu|CCGGPy 346
BssKI |CCNGG 572, 1064, 1386
BstF5I GGATGNN| 6, 577, 648
BstNI CC|[AT]GG 1386
BstXI CCANNNNN|NTGG 1176
BstYI Pu|GATCPy 378, 962
BtgI C|CPuPyGG 736
BtsI GCAGTGNN| 666
Cac8I GCN|NGC 68, 709, 914
Cfr10I [AG]|CCGG[TC] 346
DdeI C|TNAG 898, 934, 1020
DpnI GA-CH3|TC 278, 377, 725, 794, 961, 1004, 1098, 1133
DpnII |GATC 278, 377, 725, 794, 961, 1004, 1098, 1133
DraIII CACNNN|GTG 1388
Fnu4HI GC|NGC 360, 441, 686, 1459
HhaI GCG|C 705
HinP1I G|CGC 705
HincII GTPy|PuAC 97
HinfI G|ANTC 17, 626, 788, 855, 1070, 1123
HpaII C|CGG 345, 572, 1064
Hpy188I TCN|GA 797, 1136, 1283
HpyCH4III ACN|GT 259, 325, 369, 651, 657, 805, 1238, 1409
HpyCH4IV A|CGT 24, 189, 783
HpyCH4V TG|CA 439, 684, 743, 1185, 1460
MboI |GATC 278, 377, 725, 794, 961, 1004, 1098, 1133
MseI T|TAA 1058, 1196
MslI CAPyNN|NNPuTG 741, 881
MspA1I C[AC]G|C[GT]G 688, 1087
MspI C|CGG 345, 572, 1064
MwoI GCNNNNN|NNGC 441, 476, 705, 1154, 1468
NciI CC|[CG]GG 572, 1064
NcoI C|CATGG 736
NdeI CA|TATG 1001
NlaIII CATG| 283, 464, 499, 735, 848, 1309, 1352, 1365
NlaIV GGN|NCC 732, 1054
NspI PuCATG|Py 849
PspGI |CC[AT]GG 1386
PstI CTGCA|G 1461
PvuII CAG|CTG 688, 1087
RsaI GT|AC 496, 891, 1443
SacI GAGCT|C 396, 1111
SalI G|TCGAC 97
Sau3AI |GATC 278, 377, 725, 794, 961, 1004, 1098, 1133
Sau96I G|GNCC 1359, 1392
ScaI AGT|ACT 1444
ScrFI CC|NGG 572, 1064, 1386
SexAI A|CC[AT]GGT 1387
SfcI C|TPuPyAG 371, 1461
SmlI C|TPyPuAG 58, 393, 472, 1073, 1473
SnaBI TAC|GTA 25
SpeI A|CTAGT 1453
StyI C|C[AT][AT]GG 736
Taqƒ¿I T|CGA 96, 1125
TfiI G|A[AT]TC 17, 626, 788, 855, 1123
TseI G|C[AT]GC 360, 441, 686, 1459
Tsp45I |GT[CG]AC 366
Tsp509I |AATT 176, 1139
TspRI NNCA[CG]TGNN| 328, 666, 1343, 1410
XbaI T|CTAGA 778
XcmI CCANNNNN|NNNNTGG 1095


Click here to view TAIR data

>AT4G24150.1 length:1482
ATGAGGATGC TTCTTGGGAT TCCTTACGTA GACAAGTCGG TTCTTTCCAA 
50
CTCTGTTCTT GAGAGAGGCA AGCAGGATAA AAGCAAACTA TTGTTAGTCG 
100
ACAAATGCCA TTATGAGCTT GATGTTGAAG AACGCAAGGA AGATTTTGTT 
150
GGTGGGTTTG GATTTGGTGT TGTAGAAAAT TCGCATAAAG ACGTTATGGT 
200
GCTACCTCAT CATCACTATT ATCCATCATA TTCATCACCT TCCTCTTCTT 
250
CTTTGTGTTA CTGTTCTGCT GGTGTTAGCG ATCCCATGTT CTCTGTTTCT 
300
AGCAATCAGG CTTACACTTC TTCTCACAGT GGTATGTTCA CACCCGCCGG 
350
TTCTGGTTCT GCTGCTGTGA CTGTAGCAGA TCCTTTTTTC TCCTTGAGCT 
400
CTTCAGGGGA AATGAGAAGA AGTATGAACG AAGATGCTGG TGCAGCTTTC 
450
AGCGAAGCTC AATGGCATGA GCTTGAGAGG CAGAGGAATA TATACAAGTA 
500
CATGATGGCT TCTGTTCCTG TTCCTCCAGA GCTTCTCACA CCCTTTCCCA 
550
AGAACCACCA ATCAAACACT AACCCGGATG TGGATACATA TAGGAGTGGA 
600
ATGTTTAGTA TTTATGCTGA TTACAAGAAT CTGCCGTTGT CTATGTGGAT 
650
GACAGTAACT GTGGCAGTGG CGACAGGAGG CTCATTGCAG CTGGGGATTG 
700
CTTCAAGCGC AAGCAATAAC ACGGCTGATC TGGAGCCATG GAGGTGCAAG 
750
AGAACAGATG GGAAGAAATG GAGGTGCTCT AGAAACGTGA TTCCTGATCA 
800
GAAATACTGT GAGAGACACA CACACAAGAG CCGTCCTCGT TCAAGAAAGC 
850
ATGTGGAATC ATCTCACCAA TCATCTCACC ACAATGACAT TCGTACGGCT 
900
AAGAATGATA CTAGCCAGCT TGTGAGAACT TATCCTCAGT TTTACGGACA 
950
ACCTATAAGC CAGATCCCTG TGCTTTCTAC TCTTCCGTCT GCCTCCTCTC 
1000
CATATGATCA CCACAGAGGA CTGAGGTGGT TTACGAAAGA AGATGATGCC 
1050
ATTGGAACCT TAAACCCGGA GACTCAAGAA GCTGTCCAGC TGAAAGTTGG 
1100
ATCAAGCAGA GAGCTCAAAC GGGGATTCGA TTATGATCTG AATTTCAGGC 
1150
AGAAAGAGCC AATAGTAGAC CAGAGCTTTG GAGCATTGCA GGGTCTATTA 
1200
AGTCTAAACC AGACACCACA ACATAACCAA GAAACAAGAC AGTTTGTTGT 
1250
AGAAGGAAAG CAAGATGAAG CGATGGGAAG CTCTCTGACA CTCTCAATGG 
1300
CTGGAGGAGG CATGGAGGAA ACAGAGGGAA CAAACCAGCA TCAGTGGGTT 
1350
AGCCATGAAG GTCCATCATG GCTCTATTCA ACAACACCAG GTGGACCATT 
1400
GGCTGAAGCA CTGTGTCTCG GTGTCTCCAA CAACCCAAGT TCTAGTACTA 
1450
CTACTAGTAG CTGCAGCAGA AGCTCAAGCT AA
1500

>AT4G24150.1 longest ORF length:493
MRMLLGIPYV DKSVLSNSVL ERGKQDKSKL LLVDKCHYEL DVEERKEDFV 
50
GGFGFGVVEN SHKDVMVLPH HHYYPSYSSP SSSSLCYCSA GVSDPMFSVS 
100
SNQAYTSSHS GMFTPAGSGS AAVTVADPFF SLSSSGEMRR SMNEDAGAAF 
150
SEAQWHELER QRNIYKYMMA SVPVPPELLT PFPKNHQSNT NPDVDTYRSG 
200
MFSIYADYKN LPLSMWMTVT VAVATGGSLQ LGIASSASNN TADLEPWRCK 
250
RTDGKKWRCS RNVIPDQKYC ERHTHKSRPR SRKHVESSHQ SSHHNDIRTA 
300
KNDTSQLVRT YPQFYGQPIS QIPVLSTLPS ASSPYDHHRG LRWFTKEDDA 
350
IGTLNPETQE AVQLKVGSSR ELKRGFDYDL NFRQKEPIVD QSFGALQGLL 
400
SLNQTPQHNQ ETRQFVVEGK QDEAMGSSLT LSMAGGGMEE TEGTNQHQWV 
450
SHEGPSWLYS TTPGGPLAEA LCLGVSNNPS SSTTTSSCSR SSS
500