fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G25320 AT hook motif DNA-binding family protein (.1)

>AT4G25320.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRV, HindIII, KpnI, NcoI, NdeI, PacI, PstI, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 1071
EcoRI G|AATTC 1171
HpaI GTT|AAC 1057
NheI G|CTAGC 873
NotI GC|GGCCGC 165
PvuII CAG|CTG 182, 242, 250, 865
StyI C|C[AT][AT]GG 364


Click here to view TAIR data

>AT4G25320.1 length:1215
ATGGAGGAGA GAGAAGGAAC CAACATCAAC AACAACATCA CTAGCAGTTT 
50
CGGCTTGAAG CAGCAACATG AAGCTGCTGC TTCTGATGGT GGTTACTCAA 
100
TGGACCCACC ACCAAGACCC GAAAACCCTA ACCCGTTTTT AGTCCCACCC 
150
ACTACTGTCC CCGCGGCCGC CACCGTAGCA GCAGCTGTTA CTGAGAATGC 
200
GGCTACTCCG TTTAGCTTAA CAATGCCGAC GGAGAACACT TCAGCTGAGC 
250
AGCTGAAAAA GAAGAGAGGT AGGCCGAGAA AGTATAATCC CGATGGGACT 
300
CTTGTCGTGA CTTTATCGCC GATGCCAATC TCGTCCTCTG TTCCGTTGAC 
350
GTCGGAGTTT CCTCCAAGGA AACGAGGAAG AGGACGTGGC AAGTCTAATC 
400
GATGGCTCAA GAAGTCTCAA ATGTTCCAAT TCGATAGAAG TCCTGTTGAT 
450
ACCAATTTGG CAGGTGTAGG AACTGCTGAT TTTGTTGGTG CCAACTTTAC 
500
ACCTCATGTA CTGATCGTCA ACGCCGGAGA GGATGTGACG ATGAAGATAA 
550
TGACATTCTC TCAACAAGGA TCTCGTGCTA TCTGCATCCT TTCAGCTAAT 
600
GGTCCCATCT CCAATGTTAC GCTTCGTCAA TCTATGACAT CCGGTGGTAC 
650
TCTAACTTAT GAGGGTCGTT TTGAGATTCT CTCTTTGACG GGTTCGTTTA 
700
TGCAAAATGA CTCTGGAGGA ACTCGAAGTA GAGCTGGTGG TATGAGTGTT 
750
TGCCTTGCAG GACCAGATGG TCGTGTCTTT GGTGGAGGAC TCGCTGGTCT 
800
CTTTCTTGCT GCTGGTCCTG TCCAGGTAAT GGTAGGGACT TTTATAGCTG 
850
GTCAAGAGCA GTCACAGCTG GAGCTAGCAA AAGAAAGACG GCTAAGATTT 
900
GGGGCTCAAC CATCTTCTAT CTCCTTTAAC ATATCCGCAG AAGAACGGAA 
950
GGCGAGATTC GAGAGGCTTA ACAAGTCTGT TGCTATTCCT GCACCAACCA 
1000
CTTCATACAC GCATGTAAAC ACAACAAATG CGGTTCACAG TTACTATACA 
1050
AACTCGGTTA ACCATGTCAA GGATCCCTTC TCGTCTATCC CAGTAGGAGG 
1100
AGGAGGAGGT GGAGAGGTAG GAGAAGAAGA GGGTGAAGAA GATGATGATG 
1150
AATTAGAAGG TGAAGACGAA GAATTCGGAG GCGATAGCCA ATCTGACAAC 
1200
GAGATTCCGA GCTGA
1250

>AT4G25320.1 longest ORF length:404
MEEREGTNIN NNITSSFGLK QQHEAAASDG GYSMDPPPRP ENPNPFLVPP 
50
TTVPAAATVA AAVTENAATP FSLTMPTENT SAEQLKKKRG RPRKYNPDGT 
100
LVVTLSPMPI SSSVPLTSEF PPRKRGRGRG KSNRWLKKSQ MFQFDRSPVD 
150
TNLAGVGTAD FVGANFTPHV LIVNAGEDVT MKIMTFSQQG SRAICILSAN 
200
GPISNVTLRQ SMTSGGTLTY EGRFEILSLT GSFMQNDSGG TRSRAGGMSV 
250
CLAGPDGRVF GGGLAGLFLA AGPVQVMVGT FIAGQEQSQL ELAKERRLRF 
300
GAQPSSISFN ISAEERKARF ERLNKSVAIP APTTSYTHVN TTNAVHSYYT 
350
NSVNHVKDPF SSIPVGGGGG GEVGEEEGEE DDDELEGEDE EFGGDSQSDN 
400
EIPS
450