fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G25610 C2H2-like zinc finger protein (.1.2)

>AT4G25610.2 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRI, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, SalI, SmaI, SpeI, XbaI
Name Recognition sequence Cut positions
BamHI G|GATCC 66
EcoRV GAT|ATC 1239
HindIII A|AGCTT 657, 1536
PstI CTGCA|G 1590
PvuII CAG|CTG 890
SacI GAGCT|C 775
StyI C|C[AT][AT]GG 1149
XhoI C|TCGAG 976


Click here to view TAIR data

>AT4G25610.2 length:1716
ATGGAGCTTG TGAAACAAGA TGGGAATGAT TCTCTCGATA TGCTTATCAG 
50
ACGTGCGGTT GGAAAGGATC CGTTTCTTTC CTTCCCTAGA CCTGAAAATA 
100
CTCCTGTCCA GCTTTTTCAA CTTCTCCATA CCTTAGAACG TCCAGGCTGG 
150
CCATTGCTGA CCCCTTTGAA GATACAAATG CAGAAGTGTG AAAAGTGCAG 
200
TAGGGAGTTT TGCTCTCCTG TGAACTTTAG AAGACATAAC CGCATGCATC 
250
GCCGTCAAAG AAAGCCGGAA AAGGATTTTG GCAAAGAGAG GGATGCGCTG 
300
GGAGCCTTTT GGAATAAGCT CTCTGCAACT GATGCAAAGG AGATTCTCTC 
350
AGTAAAGAGC ATGATGCTTG AGGATATTCC TGGGGCATCA GTGGAGTCAG 
400
GATTAATGTC ACTTATCGAA AAACCAGGCT ATACTGCTCT GCCACAATAT 
450
TATCTAAGAG CTGGTTCTGG CCTTTTGGAT CTTCTCCAGG CTAGACCACC 
500
TAGACTTCCA ATTTCTTCGC AGGAACTTTT TAGCATTCTT GATGATGCAA 
550
GTGAAAAAAC TTTCCTGTCT AGCGAGGCTG CACCAATGCA AAAGTACATT 
600
TTTGACGGGG AAATAGGAAA AACTGTACTG GAGGCAAAAA ATGTTGTTGC 
650
TTGCGCAAGC TTCCTTCTGG AACAGCGATT GATTAAAGCA TGGCTTGCTG 
700
ACAAAGATGC TGAAGCTCTG AGGTGCCAAA ATTTACTGGT TGAAGAGGAA 
750
GAAGCTGCTC GAAGAAGAAA AGCTGAGCTC TTGGAGAGGA AGAAGAGGAA 
800
GAAGCTAAGG CAGAAAGAGC AGAGAGAGAA GGACCAGAAA AAAGATGCTA 
850
AGGAAGACGA GAGCACCACA TCAGAGGAAC AACAATATCC AGCTGAGCCA 
900
TCAAGCCCTT TATCTGTAGC TTCTGATTCT GAGGCACAGA CACCAGATTC 
950
CTTACCAATT GATGATTCTT CATCCCTCGA GGAACCTCAA GTTTTGGAAA 
1000
CTAATAATGG AAGAAACAGT GAAACGCAAG TGCCAATGGT TGATGGCTTA 
1050
GACAATGGCC AAAACATGGA AAGGCGAAGT GGCCGTAGGC AAATGCAAAG 
1100
ATCACAACAG GGAATGCCGA ATGGGTTCCA TGCTGATCAT GCACCAAACC 
1150
TTGGAGGCAT GCGAAAGAAT GGAACCAACA GAGACGCAAG AGCCAATACT 
1200
ACTAAAGTTT GGAGCCGAAA ATCCGATAAC CCCAAATTGA TATCACAACA 
1250
TGCAGCAGTG ACTCAGCAGG ATCAGACAAA GAGCAGCGAA TTTATAGTTG 
1300
GATCGTTGAG TGTATCAATC CGAAACAGTG GCGAACATAA CCAAACCAAA 
1350
TGCAGTGAAG GGGAGAGAAG AACAAAGACT GTTGAGGTGA AACCCGCATC 
1400
TGAGCAATCA ACTGTAAAAA TATGGAGACC AGTGAGCAGT CAGGGAAGAA 
1450
AAACCTCAAC AGTCAATGGA AACACAGACA AAGAAGATAA GAGATCAAAC 
1500
CCAACTACAC CCGAAGTGAA AAACGCTCAT CACATAAGCT TGCAGTTTAA 
1550
CAACCACGAA GCAAAGGCGT TTCTTGCAAA GAGCAACCTC TGCAGAACAC 
1600
GTGACATTGG TTCTGTCTCA GGAAACCGAC ATCTCAGGCA ACAACACTCA 
1650
CGAGGCACAA AGGTATACCA AAAGTGCAGT GTTAGCGAGC GAGACAGATA 
1700
TTTTCTTTGC TTCTAG
1750

>AT4G25610.2 longest ORF length:571
MELVKQDGND SLDMLIRRAV GKDPFLSFPR PENTPVQLFQ LLHTLERPGW 
50
PLLTPLKIQM QKCEKCSREF CSPVNFRRHN RMHRRQRKPE KDFGKERDAL 
100
GAFWNKLSAT DAKEILSVKS MMLEDIPGAS VESGLMSLIE KPGYTALPQY 
150
YLRAGSGLLD LLQARPPRLP ISSQELFSIL DDASEKTFLS SEAAPMQKYI 
200
FDGEIGKTVL EAKNVVACAS FLLEQRLIKA WLADKDAEAL RCQNLLVEEE 
250
EAARRRKAEL LERKKRKKLR QKEQREKDQK KDAKEDESTT SEEQQYPAEP 
300
SSPLSVASDS EAQTPDSLPI DDSSSLEEPQ VLETNNGRNS ETQVPMVDGL 
350
DNGQNMERRS GRRQMQRSQQ GMPNGFHADH APNLGGMRKN GTNRDARANT 
400
TKVWSRKSDN PKLISQHAAV TQQDQTKSSE FIVGSLSVSI RNSGEHNQTK 
450
CSEGERRTKT VEVKPASEQS TVKIWRPVSS QGRKTSTVNG NTDKEDKRSN 
500
PTTPEVKNAH HISLQFNNHE AKAFLAKSNL CRTRDIGSVS GNRHLRQQHS 
550
RGTKVYQKCS VSERDRYFLC F
600