fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G26150 GATA22, CGA1, GNL GNC-LIKE, GATA TRANSCRIPTION FACTOR 22, cytokinin-responsive gata factor 1 (.1)

>AT4G26150.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AclI, AfeI, AflII, AhdI, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AvrII, BaeI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BlpI, BmrI, BpmI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BslI, BsmAI, BsmBI, BsmFI, BsmI, BspDI, BspEI, BspMI, BsrBI, BsrDI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstEII, BstF5I, BstUI, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, ClaI, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoRI, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HincII, HpaI, HphI, Hpy99I, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MslI, MspA1I, N.BstNBI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PciI, PflFI, PflMI, PleI, PmeI, PshAI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfcI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TfiI, TspRI, Tth111I, XbaI, XmaI, XmnI
Name Recognition sequence Cut positions
AciI C|CGC 705, 723, 729, 870
AflIII A|CPuPyGT 839
AgeI A|CCGGT 753
AluI AG|CT 133, 973
AlwNI CAGNNN|CTG 737
AseI AT|TAAT 468
AvaI C|PyCGPuG 277
AvaII G|G[AT]CC 642, 651
BalI TGG|CCA 713
BamHI G|GATCC 73
BanI G|GPyPuCC 330
BclI T|GATCA 321, 854
BfaI C|TAG 860, 947
BglI GCCNNNN|NGGC 702
BglII A|GATCT 27
BsaAI PyAC|GTPu 840
BsaBI GATNN|NNATC 380
BsaJI C|CNNGG 716, 881
BsaWI [AT]|CCGG[AT] 753
BsoBI C|PyCGPuG 277
Bsp1286I G[GAT]GC[CAT]|C 331
BspHI T|CATGA 243, 758
BspT107I(HgiCI) G|G[TC][AG]CC 330
BsrFI Pu|CCGGPy 753
BssKI |CCNGG 697
BstBI TT|CGAA 456
BstNI CC|[AT]GG 697
BstYI Pu|GATCPy 27, 73
BtgI C|CPuPyGG 716
Cac8I GCN|NGC 702
Cfr10I [AG]|CCGG[TC] 753
DdeI C|TNAG 546
DpnI GA-CH3|TC 26, 38, 72, 206, 320, 395, 853, 944
DpnII |GATC 26, 38, 72, 206, 320, 395, 853, 944
EaeI Py|GGCCPu 713
EcoO109I PuG|GNCCPy 652
EcoRV GAT|ATC 450, 789
Fnu4HI GC|NGC 508, 705, 1011
HaeIII GG|CC 694, 703, 712
HindIII A|AGCTT 134
HinfI G|ANTC 623
HpaII C|CGG 752
Hpy188I TCN|GA 297, 555, 603, 644, 924
HpyCH4III ACN|GT 164, 956
HpyCH4IV A|CGT 839
HpyCH4V TG|CA 771
MboI |GATC 26, 38, 72, 206, 320, 395, 853, 944
MscI TGG|CCA 713
MseI T|TAA 467
MspI C|CGG 752
MwoI GCNNNNN|NNGC 508, 702
NlaIII CATG| 242, 421, 757
NlaIV GGN|NCC 4, 73, 330, 652
PaeR7I C|TCGAG 277
PmlI CAC|GTG 840
PpuMI PuG|G[AT]CCPy 652
PsiI TTA|TAA 573, 804
PspGI |CC[AT]GG 697
RsaI GT|AC 223
Sau3AI |GATC 26, 38, 72, 206, 320, 395, 853, 944
Sau96I G|GNCC 642, 651, 703
ScrFI CC|NGG 697
SfiI GGCCNNNN|NGGCC 703
SmlI C|TPyPuAG 277, 442, 995
Taqƒ¿I T|CGA 276, 455, 939
TliI C|TCGAG 277
TseI G|C[AT]GC 508, 1011
Tsp45I |GT[CG]AC 161
Tsp509I |AATT 8, 354, 551
XcmI CCANNNNN|NNNNTGG 1025
XhoI C|TCGAG 277


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>AT4G26150.1 length:1059
ATGGGTTCCA ATTTTCATTA CACAATAGAT CTCAATGAAG ATCAAAACCA 
50
TCAGCCTTTT TTCGCTTCTC TTGGATCCTC TCTTCATCAT CATCTACAAC 
100
AACAACAACA ACAACAACAA CATTTTCATC ACCAAGCTTC TTCTAATCCC 
150
TCTTCTTTGA TGTCACCGTC TCTTTCCTAC TTTCCTTTCT TGATAAACTC 
200
TCGCCAAGAT CAAGTATATG TTGGGTACAA CAATAACACT TTTCATGATG 
250
TTCTTGATAC CCATATCTCC CAACCTCTCG AGACCAAGAA CTTTGTATCT 
300
GATGGTGGTT CATCATCAAG TGATCAAATG GTGCCCAAGA AGGAGACACG 
350
ACTAAAATTG ACGATAAAGA AGAAAGATAA TCATCAAGAC CAAACCGATC 
400
TTCCTCAATC CCCAATAAAA GACATGACAG GAACTAACTC GCTCAAGTGG 
450
ATATCTTCGA AGGTGAGATT AATGAAGAAG AAAAAGGCGA TTATTACCAC 
500
CAGCGACAGC AGCAAACAAC ACACTAATAA CGACCAATCC TCAAACCTAA 
550
GCAATTCGGA AAGACAGAAT GGTTATAACA ACGATTGCGT GATTAGGATT 
600
TGCTCCGATT GTAACACAAC CAAGACTCCT CTTTGGAGAA GTGGTCCGAG 
650
AGGTCCCAAG TCTCTTTGTA ACGCTTGTGG AATAAGGCAA AGGAAGGCCA 
700
GGCGGGCCGC TATGGCCACG GCAACCGCAA CCGCAGTCTC TGGCGTATCC 
750
CCACCGGTCA TGAAGAAGAA GATGCAAAAC AAGAACAAGA TATCAAATGG 
800
AGTTTATAAA ATCTTATCTC CTTTGCCCCT AAAGGTAAAC ACGTGTAAGA 
850
GAATGATCAC ACTAGAGGAG ACCGCATTAG CCGAGGATTT GGAGACCCAG 
900
AGCAACTCCA CGATGTTATC ATCTTCAGAC AATATCTATT TCGATGATCT 
950
AGCATTACTG TTGAGCAAAA GTTCAGCTTA TCAGCAAGTT TTCCCTCAAG 
1000
ATGAGAAGGA GGCTGCCATT TTACTAATGG CTCTATCGCA CGGAATGGTT 
1050
CACGGGTGA
1100

>AT4G26150.1 longest ORF length:352
MGSNFHYTID LNEDQNHQPF FASLGSSLHH HLQQQQQQQQ HFHHQASSNP 
50
SSLMSPSLSY FPFLINSRQD QVYVGYNNNT FHDVLDTHIS QPLETKNFVS 
100
DGGSSSSDQM VPKKETRLKL TIKKKDNHQD QTDLPQSPIK DMTGTNSLKW 
150
ISSKVRLMKK KKAIITTSDS SKQHTNNDQS SNLSNSERQN GYNNDCVIRI 
200
CSDCNTTKTP LWRSGPRGPK SLCNACGIRQ RKARRAAMAT ATATAVSGVS 
250
PPVMKKKMQN KNKISNGVYK ILSPLPLKVN TCKRMITLEE TALAEDLETQ 
300
SNSTMLSSSD NIYFDDLALL LSKSSAYQQV FPQDEKEAAI LLMALSHGMV 
350
HG
400