fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G27950 CRF4 cytokinin response factor 4 (.1)

>AT4G27950.1 CDS map

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Uncut enzymes: Acc65I, AccIII(BspMII), AfeI, AflII, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BslI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstZ17I, Bsu36I, BtrI, BtsI, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HincII, HindIII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, NaeI, , NarI, NciI, NgoMIV, NheI, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TliI, Tsp509I, Tth111I, XbaI, XhoI, XmaI
Name Recognition sequence Cut positions
AatII GACGT|C 259
AccI GT|[AC][TG]AC 466
AccII(FnuDII) CG|CG 353
AciI C|CGC 352
AclI AA|CGTT 298
AflIII A|CPuPyGT 201, 575
AgeI A|CCGGT 540, 690
AluI AG|CT 242, 454, 731
AvaII G|G[AT]CC 281
BfaI C|TAG 237
BsaHI GPu|CGPyC 151, 259
BsaJI C|CNNGG 354, 373
BsaWI [AT]|CCGG[AT] 284, 540, 564, 690
BsiHKAI G[AT]GC[AT]|C 46
Bsp1286I G[GAT]GC[CAT]|C 46
BspDI AT|CGAT 673
BsrFI Pu|CCGGPy 253, 540, 690
BssKI |CCNGG 118
BstF5I GGATGNN| 10
BstNI CC|[AT]GG 118
BstUI CG|CG 353
BstXI CCANNNNN|NTGG 733
BstYI Pu|GATCPy 21
BtgI C|CPuPyGG 354, 373
Cac8I GCN|NGC 734
Cfr10I [AG]|CCGG[TC] 253, 540, 690
ClaI AT|CGAT 673
DdeI C|TNAG 24, 406
DpnI GA-CH3|TC 20, 143, 223, 401, 842, 937, 965, 989
DpnII |GATC 20, 143, 223, 401, 842, 937, 965, 989
EaeI Py|GGCCPu 116, 333
EcoRV GAT|ATC 588, 984
Fnu4HI GC|NGC 241, 355, 387, 456, 477
HaeIII GG|CC 115, 332, 494
HinfI G|ANTC 111, 159, 229, 292, 303, 395, 421, 594, 606, 771, 816, 975
HpaII C|CGG 252, 283, 330, 415, 539, 563, 689
Hpy188I TCN|GA 61, 226, 272, 591, 626, 660, 933, 987
Hpy99I CG[AT]CG| 170, 257, 274
HpyCH4III ACN|GT 54, 309, 519
HpyCH4IV A|CGT 199, 258, 297
HpyCH4V TG|CA 439
MboI |GATC 20, 143, 223, 401, 842, 937, 965, 989
MseI T|TAA 216, 693
MspA1I C[AC]G|C[GT]G 354
MspI C|CGG 252, 283, 330, 415, 539, 563, 689
MwoI GCNNNNN|NNGC 453
N.BstNBI GAGTCNNNN|N 234
NcoI C|CATGG 373
NdeI CA|TATG 653
NlaIII CATG| 372, 574
NlaIV GGN|NCC 666
NspI PuCATG|Py 575
PciI A|CATGT 575
PspGI |CC[AT]GG 118
RsaI GT|AC 37, 67, 349, 432, 521, 542
SacII CCGC|GG 354
Sau3AI |GATC 20, 143, 223, 401, 842, 937, 965, 989
Sau96I G|GNCC 281, 495
ScrFI CC|NGG 118
SgrAI CPu|CCGGPyG 254
StyI C|C[AT][AT]GG 373
Taqƒ¿I T|CGA 193, 231, 584, 672, 798, 840, 903
TfiI G|A[AT]TC 159, 292, 303, 395, 421, 594, 606, 771, 816, 975
TseI G|C[AT]GC 241, 456, 477
Tsp45I |GT[CG]AC 109, 148
TspRI NNCA[CG]TGNN| 33, 103, 157
XcmI CCANNNNN|NNNNTGG 382
XmnI GAANN|NNTTC 182, 880


Click here to view TAIR data

>AT4G27950.1 length:1008
ATGATGATGG ATGAGTTTAT GGATCTTAGA CCAGTGAAGT ACACAGAGCA 
50
CAAGACTGTT ATCAGAAAGT ACACTAAAAA GTCGTCTATG GAGAGGAAGA 
100
CCAGTGTTCG TGACTCGGCC AGGTTGGTTC GGGTCTCAAT GACGGATCGT 
150
GACGCCACTG ATTCATCAAG CGACGAGGAA GAGTTTCTGT TCCCTCGAAG 
200
ACGTGTCAAG AGATTGATTA ACGAGATCAG AGTCGAGCCT AGCAGCTCTT 
250
CCACCGGCGA CGTCTCTGCT TCTCCGACGA AGGACCGGAA AAGAATCAAC 
300
GTTGATTCTA CGGTTCAAAA GCCCTCTGTT TCCGGCCAAA ACCAGAAGAA 
350
GTACCGCGGC GTGAGACAGC GACCATGGGG AAAATGGGCG GCGGAGATTC 
400
GTGATCCTGA GCAACGCCGG AGAATCTGGC TCGGTACTTT TGCAACGGCG 
450
GAGGAAGCTG CCATCGTCTA CGACAACGCA GCAATCAAAC TTCGTGGCCC 
500
TGATGCTCTT ACCAACTTCA CCGTACAACC AGAACCAGAA CCGGTACAAG 
550
AACAAGAACA AGAACCGGAG AGCAACATGT CGGTTTCGAT ATCAGAATCA 
600
ATGGACGATT CTCAACATCT ATCATCTCCG ACATCGGTTC TCAACTACCA 
650
AACATATGTC TCGGAGGAAC CAATCGATAG TCTTATCAAA CCGGTTAAAC 
700
AAGAGTTTCT TGAACCAGAA CAAGAGCCAA TAAGCTGGCA TCTTGGAGAA 
750
GGTAATACTA ATACTAATGA TGATTCATTT CCATTGGACA TTACATTTCT 
800
CGACAACTAT TTCAATGAAT CATTACCAGA CATCTCCATC TTCGATCAAC 
850
CTATGTCTCC TATTCAACCA ACAGAGAATG ATTTCTTCAA CGACCTTATG 
900
TTATTCGATA GCAACGCAGA AGAATACTAC TCCTCCGAGA TCAAAGAGAT 
950
TGGTTCATCG TTCAACGATC TTGATGATTC TTTGATATCC GATCTCTTAC 
1000
TTGTGTGA
1050

>AT4G27950.1 longest ORF length:335
MMMDEFMDLR PVKYTEHKTV IRKYTKKSSM ERKTSVRDSA RLVRVSMTDR 
50
DATDSSSDEE EFLFPRRRVK RLINEIRVEP SSSSTGDVSA SPTKDRKRIN 
100
VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA 
150
EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES 
200
MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE 
250
GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM 
300
LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV
350