fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G28140 Integrase-type DNA-binding superfamily protein (.1)

>AT4G28140.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, EcoRV, NdeI, NheI, NotI, PacI, PstI, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 91
HindIII A|AGCTT 71
HpaI GTT|AAC 682
KpnI GGTAC|C 508
NcoI C|CATGG 536
PvuII CAG|CTG 521
StyI C|C[AT][AT]GG 536


Click here to view TAIR data

>AT4G28140.1 length:879
ATGGACTTTG ACGAGGAGCT AAATCTTTGT ATTACGAAAG GTAAAAATGT 
50
TGATCATTCT TTTGGAGGAG AAGCTTCTTC CACGTCCCCA AGATCTATGA 
100
AGAAAATGAA GAGTCCTAGT CGTCCTAAAC CCTATTTCCA ATCCTCTTCT 
150
TCTCCTTATT CGTTAGAGGC TTTCCCTTTT TCTCTCGATC CAACACTTCA 
200
GAATCAGCAA CAACAACTCG GATCATACGT TCCGGTACTT GAGCAACGAC 
250
AAGACCCGAC AATGCAAGGC CAGAAGCAAA TGATCTCCTT TAGTCCTCAA 
300
CAACAACAAC AGCAGCAGCA GTATATGGCC CAGTACTGGA GTGACACATT 
350
GAATCTGAGT CCAAGAGGAA GAATGATGAT GATGATGAGC CAAGAAGCTG 
400
TTCAACCTTA CATCGCAACG AAGCTGTACA GAGGAGTGAG ACAACGTCAA 
450
TGGGGAAAAT GGGTCGCAGA GATCCGTAAG CCACGAAGCA GGGCACGTCT 
500
TTGGCTTGGT ACCTTTGATA CAGCTGAAGA AGCTGCCATG GCCTACGACC 
550
GCCAAGCCTT CAAATTACGA GGCCACAGCG CAACACTGAA TTTCCCGGAG 
600
CATTTTGTGA ATAAGGAAAG CGAGCTGCAT GATTCAAACT CGTCGGATCA 
650
GAAAGAACCT GAAACGCCAC AGCCAAGCGA GGTTAACTTG GAGAGCAAGG 
700
AACTACCGGT GATTGATGTT GGGAGAGAGG AAGGTATGGC TGAGGCATGG 
750
TACAATGCCA TTACATCGGG ATGGGGTCCT GAAAGTCCTC TTTGGGATGA 
800
TTTGGATAGT TCTCATCAGT TTTCATCAGA AAGCTCATCT TCTTCTCCTC 
850
TCTCTTGTCC TATGAGGCCT TTCTTTTGA
900

>AT4G28140.1 longest ORF length:292
MDFDEELNLC ITKGKNVDHS FGGEASSTSP RSMKKMKSPS RPKPYFQSSS 
50
SPYSLEAFPF SLDPTLQNQQ QQLGSYVPVL EQRQDPTMQG QKQMISFSPQ 
100
QQQQQQQYMA QYWSDTLNLS PRGRMMMMMS QEAVQPYIAT KLYRGVRQRQ 
150
WGKWVAEIRK PRSRARLWLG TFDTAEEAAM AYDRQAFKLR GHSATLNFPE 
200
HFVNKESELH DSNSSDQKEP ETPQPSEVNL ESKELPVIDV GREEGMAEAW 
250
YNAITSGWGP ESPLWDDLDS SHQFSSESSS SSPLSCPMRP FF
300