fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G28530 ANAC074 NAC domain containing protein 74 (.1.2)

>AT4G28530.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccII(FnuDII), AciI, AclI, AfeI, AflII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstNI, BstUI, BstXI, BstZ17I, BtrI, BtsI, Cac8I, ClaI, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, MscI, MspA1I, NaeI, , NarI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PspGI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SphI, SspI, StuI, SwaI, TfiI, TliI, Tsp45I, XbaI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AccI GT|[AC][TG]AC 856
AccIII(BspMII) T|CCGGA 594
AflIII A|CPuPyGT 958
AluI AG|CT 148, 207, 696
ApoI Pu|AATTPy 843
AvaII G|G[AT]CC 19, 718
BamHI G|GATCC 351
BclI T|GATCA 108, 684, 825, 888
BfaI C|TAG 389, 926
BsaAI PyAC|GTPu 356
BsaBI GATNN|NNATC 670, 787, 893, 972
BsaJI C|CNNGG 34, 202
BsaWI [AT]|CCGG[AT] 594
BsiHKAI G[AT]GC[AT]|C 410
BslI CCNNNNN|NNGG 479
Bsp1286I G[GAT]GC[CAT]|C 410
BspEI T|CCGGA 594
BsrFI Pu|CCGGPy 724
BsrI ACTGGN| 280, 317, 488
BssKI |CCNGG 33
BstF5I GGATGNN| 378, 979
BstYI Pu|GATCPy 351, 597
Bsu36I CC|TNAGG 479
BtgI C|CPuPyGG 202
Cfr10I [AG]|CCGG[TC] 724
DdeI C|TNAG 478
DpnI GA-CH3|TC 107, 167, 263, 335, 350, 421, 436, 596, 683, 787, 824, 887, 944, 966, 995
DpnII |GATC 107, 167, 263, 335, 350, 421, 436, 596, 683, 787, 824, 887, 944, 966, 995
EaeI Py|GGCCPu 726
EcoRV GAT|ATC 284
Fnu4HI GC|NGC 695, 707
HaeIII GG|CC 97, 725, 818
HincII GTPy|PuAC 856, 874
HindIII A|AGCTT 149
HinfI G|ANTC 522, 812, 831
HpaII C|CGG 32, 593, 723
Hpy188I TCN|GA 105, 563, 896, 975, 993
Hpy99I CG[AT]CG| 854
HpyCH4III ACN|GT 303, 342, 868
HpyCH4IV A|CGT 355, 852
HpyCH4V TG|CA 83, 186, 441, 497
MboI |GATC 107, 167, 263, 335, 350, 421, 436, 596, 683, 787, 824, 887, 944, 966, 995
MfeI C|AATTG 367
MseI T|TAA 227, 582, 600
MslI CAPyNN|NNPuTG 53, 116, 194, 656
MspI C|CGG 32, 593, 723
MwoI GCNNNNN|NNGC 206, 626, 704, 845
N.BstNBI GAGTCNNNN|N 817, 836
NciI CC|[CG]GG 33
NcoI C|CATGG 202
NlaIII CATG| 110, 201, 439, 656, 765, 815, 931, 957, 1003
NlaIV GGN|NCC 19, 351
NspI PuCATG|Py 766, 958
PciI A|CATGT 958
PflFI GACN|NNGTC 490
PsiI TTA|TAA 549
RsaI GT|AC 244, 357
SalI G|TCGAC 856
Sau3AI |GATC 107, 167, 263, 335, 350, 421, 436, 596, 683, 787, 824, 887, 944, 966, 995
Sau96I G|GNCC 19, 97, 718, 819
ScrFI CC|NGG 33
SfcI C|TPuPyAG 399
SmlI C|TPyPuAG 457
SpeI A|CTAGT 390
StyI C|C[AT][AT]GG 202
Taqƒ¿I T|CGA 40, 265, 337, 809, 855
TseI G|C[AT]GC 695, 707
Tsp509I |AATT 24, 366, 542, 602, 842, 899
TspRI NNCA[CG]TGNN| 689, 871, 883
Tth111I GACN|NNGTC 490


Click here to view TAIR data

>AT4G28530.1 length:1059
ATGGGTTTGA AAGATATTGG GTCCAAATTG CCACCGGGGT TTCGATTTCA 
50
TCCAAGTGAT GAAGAGTTGG TTTGTCATTA TCTTTGCAAC AAGATTAGGG 
100
CCAAATCTGA TCATGGTGAT GTTGATGATG ATGATGATGA TGTTGATGAA 
150
GCTTTGAAGG GTTCTACTGA TCTTGTGGAG ATTGACTTGC ATATCTGTGA 
200
GCCATGGGAG CTTCCTGATG TGGCAAAGTT AAACGCAAAG GAATGGTACT 
250
TCTTCAGTTT CCGTGATCGA AAGTATGCTA CTGGATATCG CACGAACAGA 
300
GCGACAGTAA GCGGATACTG GAAAGCAACA GGAAAAGATC GAACGGTGAT 
350
GGATCCACGT ACAAGGCAAT TGGTAGGGAT GAGAAAAACA CTAGTGTTCT 
400
ACAGAAACAG AGCACCAAAT GGGATCAAAA CTACTTGGAT CATGCACGAG 
450
TTCCGTCTTG AGTGTCCTAA CATCCCACCT AAGGAAGACT GGGTCTTGTG 
500
CAGAGTGTTC AACAAAGGCA GAGACTCATC GCTACAAGAC AATAATTATT 
550
ATAACAATGA TAATCAGACG CAAAGGCTTG AAGTTAATGA CGCTCCGGAT 
600
CTTAATTACA ACAATCAGTT GCCACCTTTG CTATCATCCC CTCCTCATAA 
650
TCATCAACAT GAGAAGATGA AAATCCAAGT TTGTGATCAG TGGGAGCAGC 
700
TAATGAAGCA GCCTTCAAGG ACCACCGGCC ACCCCTATCA TCACCATTGT 
750
CATCATCAAA CCATAGCATG TGGTTGGGAG CAGATGATGA TCGGTTCGCT 
800
GTCATCACCT TCGAGTCATG GCCCTGATCA CGAGTCCTTG CTAAATTTGC 
850
TTTACGTCGA CAATAACAAC AGTGTCAACA TCAGTGGTGA TCATCATCAG 
900
AATTATGAGA AGATTTTGTT GTCATCACTA GACATGACGA GTTTGGATCA 
950
CGACAAGACA TGTATGGGAT CATCATCGGA TGGTGGTATG GTCTCTGATC 
1000
TTCACATGGA ATGTGGTGGA TTGAGTTTTG AGACCGAAAA TATCCTCGCT 
1050
TTCCAATGA
1100

>AT4G28530.1 longest ORF length:352
MGLKDIGSKL PPGFRFHPSD EELVCHYLCN KIRAKSDHGD VDDDDDDVDE 
50
ALKGSTDLVE IDLHICEPWE LPDVAKLNAK EWYFFSFRDR KYATGYRTNR 
100
ATVSGYWKAT GKDRTVMDPR TRQLVGMRKT LVFYRNRAPN GIKTTWIMHE 
150
FRLECPNIPP KEDWVLCRVF NKGRDSSLQD NNYYNNDNQT QRLEVNDAPD 
200
LNYNNQLPPL LSSPPHNHQH EKMKIQVCDQ WEQLMKQPSR TTGHPYHHHC 
250
HHQTIACGWE QMMIGSLSSP SSHGPDHESL LNLLYVDNNN SVNISGDHHQ 
300
NYEKILLSSL DMTSLDHDKT CMGSSSDGGM VSDLHMECGG LSFETENILA 
350
FQ
400