Locus |
Common name |
Short description |
AT4G28530 |
ANAC074 |
NAC domain containing protein 74 (.1.2) |
>AT4G28530.1 CDS map
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Uncut enzymes: AatII, Acc65I, AccII(FnuDII), AciI, AclI, AfeI, AflII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstNI, BstUI, BstXI, BstZ17I, BtrI, BtsI, Cac8I, ClaI, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, MscI, MspA1I, NaeI, , NarI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PspGI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SphI, SspI, StuI, SwaI, TfiI, TliI, Tsp45I, XbaI, XcmI, XhoI, XmaI, XmnI
Name |
Recognition sequence |
Cut positions |
AccI
| GT|[AC][TG]AC |
856 |
AccIII(BspMII)
| T|CCGGA |
594 |
AflIII
| A|CPuPyGT |
958 |
AluI
| AG|CT |
148, 207, 696 |
ApoI
| Pu|AATTPy |
843 |
AvaII
| G|G[AT]CC |
19, 718 |
BamHI
| G|GATCC |
351 |
BclI
| T|GATCA |
108, 684, 825, 888 |
BfaI
| C|TAG |
389, 926 |
BsaAI
| PyAC|GTPu |
356 |
BsaBI
| GATNN|NNATC |
670, 787, 893, 972 |
BsaJI
| C|CNNGG |
34, 202 |
BsaWI
| [AT]|CCGG[AT] |
594 |
BsiHKAI
| G[AT]GC[AT]|C |
410 |
BslI
| CCNNNNN|NNGG |
479 |
Bsp1286I
| G[GAT]GC[CAT]|C |
410 |
BspEI
| T|CCGGA |
594 |
BsrFI
| Pu|CCGGPy |
724 |
BsrI
| ACTGGN| |
280, 317, 488 |
BssKI
| |CCNGG |
33 |
BstF5I
| GGATGNN| |
378, 979 |
BstYI
| Pu|GATCPy |
351, 597 |
Bsu36I
| CC|TNAGG |
479 |
BtgI
| C|CPuPyGG |
202 |
Cfr10I
| [AG]|CCGG[TC] |
724 |
DdeI
| C|TNAG |
478 |
DpnI
| GA-CH3|TC |
107, 167, 263, 335, 350, 421, 436, 596, 683, 787, 824, 887, 944, 966, 995 |
DpnII
| |GATC |
107, 167, 263, 335, 350, 421, 436, 596, 683, 787, 824, 887, 944, 966, 995 |
EaeI
| Py|GGCCPu |
726 |
EcoRV
| GAT|ATC |
284 |
Fnu4HI
| GC|NGC |
695, 707 |
HaeIII
| GG|CC |
97, 725, 818 |
HincII
| GTPy|PuAC |
856, 874 |
HindIII
| A|AGCTT |
149 |
HinfI
| G|ANTC |
522, 812, 831 |
HpaII
| C|CGG |
32, 593, 723 |
Hpy188I
| TCN|GA |
105, 563, 896, 975, 993 |
Hpy99I
| CG[AT]CG| |
854 |
HpyCH4III
| ACN|GT |
303, 342, 868 |
HpyCH4IV
| A|CGT |
355, 852 |
HpyCH4V
| TG|CA |
83, 186, 441, 497 |
MboI
| |GATC |
107, 167, 263, 335, 350, 421, 436, 596, 683, 787, 824, 887, 944, 966, 995 |
MfeI
| C|AATTG |
367 |
MseI
| T|TAA |
227, 582, 600 |
MslI
| CAPyNN|NNPuTG |
53, 116, 194, 656 |
MspI
| C|CGG |
32, 593, 723 |
MwoI
| GCNNNNN|NNGC |
206, 626, 704, 845 |
N.BstNBI
| GAGTCNNNN|N |
817, 836 |
NciI
| CC|[CG]GG |
33 |
NcoI
| C|CATGG |
202 |
NlaIII
| CATG| |
110, 201, 439, 656, 765, 815, 931, 957, 1003 |
NlaIV
| GGN|NCC |
19, 351 |
NspI
| PuCATG|Py |
766, 958 |
PciI
| A|CATGT |
958 |
PflFI
| GACN|NNGTC |
490 |
PsiI
| TTA|TAA |
549 |
RsaI
| GT|AC |
244, 357 |
SalI
| G|TCGAC |
856 |
Sau3AI
| |GATC |
107, 167, 263, 335, 350, 421, 436, 596, 683, 787, 824, 887, 944, 966, 995 |
Sau96I
| G|GNCC |
19, 97, 718, 819 |
ScrFI
| CC|NGG |
33 |
SfcI
| C|TPuPyAG |
399 |
SmlI
| C|TPyPuAG |
457 |
SpeI
| A|CTAGT |
390 |
StyI
| C|C[AT][AT]GG |
202 |
Taqƒ¿I
| T|CGA |
40, 265, 337, 809, 855 |
TseI
| G|C[AT]GC |
695, 707 |
Tsp509I
| |AATT |
24, 366, 542, 602, 842, 899 |
TspRI
| NNCA[CG]TGNN| |
689, 871, 883 |
Tth111I
| GACN|NNGTC |
490 |
Click here to view TAIR data
>AT4G28530.1 length:1059
ATGGGTTTGA AAGATATTGG GTCCAAATTG CCACCGGGGT TTCGATTTCA | 50 |
TCCAAGTGAT GAAGAGTTGG TTTGTCATTA TCTTTGCAAC AAGATTAGGG | 100 |
CCAAATCTGA TCATGGTGAT GTTGATGATG ATGATGATGA TGTTGATGAA | 150 |
GCTTTGAAGG GTTCTACTGA TCTTGTGGAG ATTGACTTGC ATATCTGTGA | 200 |
GCCATGGGAG CTTCCTGATG TGGCAAAGTT AAACGCAAAG GAATGGTACT | 250 |
TCTTCAGTTT CCGTGATCGA AAGTATGCTA CTGGATATCG CACGAACAGA | 300 |
GCGACAGTAA GCGGATACTG GAAAGCAACA GGAAAAGATC GAACGGTGAT | 350 |
GGATCCACGT ACAAGGCAAT TGGTAGGGAT GAGAAAAACA CTAGTGTTCT | 400 |
ACAGAAACAG AGCACCAAAT GGGATCAAAA CTACTTGGAT CATGCACGAG | 450 |
TTCCGTCTTG AGTGTCCTAA CATCCCACCT AAGGAAGACT GGGTCTTGTG | 500 |
CAGAGTGTTC AACAAAGGCA GAGACTCATC GCTACAAGAC AATAATTATT | 550 |
ATAACAATGA TAATCAGACG CAAAGGCTTG AAGTTAATGA CGCTCCGGAT | 600 |
CTTAATTACA ACAATCAGTT GCCACCTTTG CTATCATCCC CTCCTCATAA | 650 |
TCATCAACAT GAGAAGATGA AAATCCAAGT TTGTGATCAG TGGGAGCAGC | 700 |
TAATGAAGCA GCCTTCAAGG ACCACCGGCC ACCCCTATCA TCACCATTGT | 750 |
CATCATCAAA CCATAGCATG TGGTTGGGAG CAGATGATGA TCGGTTCGCT | 800 |
GTCATCACCT TCGAGTCATG GCCCTGATCA CGAGTCCTTG CTAAATTTGC | 850 |
TTTACGTCGA CAATAACAAC AGTGTCAACA TCAGTGGTGA TCATCATCAG | 900 |
AATTATGAGA AGATTTTGTT GTCATCACTA GACATGACGA GTTTGGATCA | 950 |
CGACAAGACA TGTATGGGAT CATCATCGGA TGGTGGTATG GTCTCTGATC | 1000 |
TTCACATGGA ATGTGGTGGA TTGAGTTTTG AGACCGAAAA TATCCTCGCT | 1050 |
TTCCAATGA | 1100 |
>AT4G28530.1 longest ORF length:352
MGLKDIGSKL PPGFRFHPSD EELVCHYLCN KIRAKSDHGD VDDDDDDVDE | 50 |
ALKGSTDLVE IDLHICEPWE LPDVAKLNAK EWYFFSFRDR KYATGYRTNR | 100 |
ATVSGYWKAT GKDRTVMDPR TRQLVGMRKT LVFYRNRAPN GIKTTWIMHE | 150 |
FRLECPNIPP KEDWVLCRVF NKGRDSSLQD NNYYNNDNQT QRLEVNDAPD | 200 |
LNYNNQLPPL LSSPPHNHQH EKMKIQVCDQ WEQLMKQPSR TTGHPYHHHC | 250 |
HHQTIACGWE QMMIGSLSSP SSHGPDHESL LNLLYVDNNN SVNISGDHHQ | 300 |
NYEKILLSSL DMTSLDHDKT CMGSSSDGGM VSDLHMECGG LSFETENILA | 350 |
FQ | 400 |
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