fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G28530 ANAC074 NAC domain containing protein 74 (.1.2)

>AT4G28530.2 CDS map

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Uncut enzymes: AatII, Acc65I, AccII(FnuDII), AciI, AclI, AfeI, AflII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BslI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, Bsp1286I, BspDI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstNI, BstUI, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, Cac8I, ClaI, DdeI, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, MscI, MspA1I, NaeI, , NarI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PspGI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SapI, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TfiI, TliI, Tsp45I, XbaI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AccI GT|[AC][TG]AC 745
AccIII(BspMII) T|CCGGA 483
AflIII A|CPuPyGT 847
AluI AG|CT 148, 207, 585
ApoI Pu|AATTPy 732
AvaII G|G[AT]CC 19, 607
BamHI G|GATCC 351
BclI T|GATCA 108, 573, 714, 777
BfaI C|TAG 815
BsaAI PyAC|GTPu 356
BsaBI GATNN|NNATC 559, 676, 782, 861
BsaJI C|CNNGG 34, 202
BsaWI [AT]|CCGG[AT] 483
BspEI T|CCGGA 483
BsrFI Pu|CCGGPy 613
BsrI ACTGGN| 280, 317, 377
BssKI |CCNGG 33
BstF5I GGATGNN| 868
BstYI Pu|GATCPy 351, 486
BtgI C|CPuPyGG 202
Cfr10I [AG]|CCGG[TC] 613
DpnI GA-CH3|TC 107, 167, 263, 335, 350, 485, 572, 676, 713, 776, 833, 855, 884
DpnII |GATC 107, 167, 263, 335, 350, 485, 572, 676, 713, 776, 833, 855, 884
EaeI Py|GGCCPu 615
EcoRV GAT|ATC 284
Fnu4HI GC|NGC 584, 596
HaeIII GG|CC 97, 614, 707
HincII GTPy|PuAC 745, 763
HindIII A|AGCTT 149
HinfI G|ANTC 411, 701, 720
HpaII C|CGG 32, 482, 612
Hpy188I TCN|GA 105, 452, 785, 864, 882
Hpy99I CG[AT]CG| 743
HpyCH4III ACN|GT 303, 342, 757
HpyCH4IV A|CGT 355, 741
HpyCH4V TG|CA 83, 186, 386
MboI |GATC 107, 167, 263, 335, 350, 485, 572, 676, 713, 776, 833, 855, 884
MfeI C|AATTG 367
MseI T|TAA 227, 471, 489
MslI CAPyNN|NNPuTG 53, 116, 194, 545
MspI C|CGG 32, 482, 612
MwoI GCNNNNN|NNGC 206, 515, 593, 734
N.BstNBI GAGTCNNNN|N 706, 725
NciI CC|[CG]GG 33
NcoI C|CATGG 202
NlaIII CATG| 110, 201, 545, 654, 704, 820, 846, 892
NlaIV GGN|NCC 19, 351
NspI PuCATG|Py 655, 847
PciI A|CATGT 847
PflFI GACN|NNGTC 379
PsiI TTA|TAA 438
RsaI GT|AC 244, 357
SalI G|TCGAC 745
Sau3AI |GATC 107, 167, 263, 335, 350, 485, 572, 676, 713, 776, 833, 855, 884
Sau96I G|GNCC 19, 97, 607, 708
ScrFI CC|NGG 33
StyI C|C[AT][AT]GG 202
Taqƒ¿I T|CGA 40, 265, 337, 698, 744
TseI G|C[AT]GC 584, 596
Tsp509I |AATT 24, 366, 431, 491, 731, 788
TspRI NNCA[CG]TGNN| 578, 760, 772
Tth111I GACN|NNGTC 379


Click here to view TAIR data

>AT4G28530.2 length:948
ATGGGTTTGA AAGATATTGG GTCCAAATTG CCACCGGGGT TTCGATTTCA 
50
TCCAAGTGAT GAAGAGTTGG TTTGTCATTA TCTTTGCAAC AAGATTAGGG 
100
CCAAATCTGA TCATGGTGAT GTTGATGATG ATGATGATGA TGTTGATGAA 
150
GCTTTGAAGG GTTCTACTGA TCTTGTGGAG ATTGACTTGC ATATCTGTGA 
200
GCCATGGGAG CTTCCTGATG TGGCAAAGTT AAACGCAAAG GAATGGTACT 
250
TCTTCAGTTT CCGTGATCGA AAGTATGCTA CTGGATATCG CACGAACAGA 
300
GCGACAGTAA GCGGATACTG GAAAGCAACA GGAAAAGATC GAACGGTGAT 
350
GGATCCACGT ACAAGGCAAT TGGAAGACTG GGTCTTGTGC AGAGTGTTCA 
400
ACAAAGGCAG AGACTCATCG CTACAAGACA ATAATTATTA TAACAATGAT 
450
AATCAGACGC AAAGGCTTGA AGTTAATGAC GCTCCGGATC TTAATTACAA 
500
CAATCAGTTG CCACCTTTGC TATCATCCCC TCCTCATAAT CATCAACATG 
550
AGAAGATGAA AATCCAAGTT TGTGATCAGT GGGAGCAGCT AATGAAGCAG 
600
CCTTCAAGGA CCACCGGCCA CCCCTATCAT CACCATTGTC ATCATCAAAC 
650
CATAGCATGT GGTTGGGAGC AGATGATGAT CGGTTCGCTG TCATCACCTT 
700
CGAGTCATGG CCCTGATCAC GAGTCCTTGC TAAATTTGCT TTACGTCGAC 
750
AATAACAACA GTGTCAACAT CAGTGGTGAT CATCATCAGA ATTATGAGAA 
800
GATTTTGTTG TCATCACTAG ACATGACGAG TTTGGATCAC GACAAGACAT 
850
GTATGGGATC ATCATCGGAT GGTGGTATGG TCTCTGATCT TCACATGGAA 
900
TGTGGTGGAT TGAGTTTTGA GACCGAAAAT ATCCTCGCTT TCCAATGA
950

>AT4G28530.2 longest ORF length:315
MGLKDIGSKL PPGFRFHPSD EELVCHYLCN KIRAKSDHGD VDDDDDDVDE 
50
ALKGSTDLVE IDLHICEPWE LPDVAKLNAK EWYFFSFRDR KYATGYRTNR 
100
ATVSGYWKAT GKDRTVMDPR TRQLEDWVLC RVFNKGRDSS LQDNNYYNND 
150
NQTQRLEVND APDLNYNNQL PPLLSSPPHN HQHEKMKIQV CDQWEQLMKQ 
200
PSRTTGHPYH HHCHHQTIAC GWEQMMIGSL SSPSSHGPDH ESLLNLLYVD 
250
NNNSVNISGD HHQNYEKILL SSLDMTSLDH DKTCMGSSSD GGMVSDLHME 
300
CGGLSFETEN ILAFQ
350