fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G28640 IAA11 indole-3-acetic acid inducible 11 (.1.2.3)

>AT4G28640.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, KpnI, NdeI, NotI, PacI, PstI, SacI, SalI, SmaI, XhoI
Name Recognition sequence Cut positions
HpaI GTT|AAC 310
NcoI C|CATGG 242
NheI G|CTAGC 205
PvuII CAG|CTG 233
SpeI A|CTAGT 253
StyI C|C[AT][AT]GG 123, 242
XbaI T|CTAGA 498


Click here to view TAIR data

>AT4G28640.1 length:741
ATGGAAGGCG GTTCCGCTAG TGGATCGGCT TCGGCTTTGT CAAACGATGA 
50
AAATCTCGTC GTTTCTTGTG AGGATTCTTC TTCTCCTATA GGGAATGAGC 
100
TTGAGCTTGG TCTTACGTTG AGCCTTGGTC GCAAAGGGTA TCGAGATTGT 
150
AGGGTTTACG CTGATGATTC TTCTTCTTCT TCATCATCTT CTTCTCTGAG 
200
CAGAGCTAGC GTAATTGCTG GGATCAAGAG GACAGCTGAT TCCATGGCTG 
250
CAACTAGTGG GCAAGTTGTG GGATGGCCAC CAATAAGGAC TTACAGAATG 
300
AACAGTATGG TTAACCAAGC TAAGGCTTCA GCCACTGAAG ATCCGAACTT 
350
GGAGATAAGT CAAGCCGTAA ACAAGAATAG AAGTGATTCA ACAAAGATGA 
400
GAAATTCCAT GTTTGTTAAG GTGACTATGG ATGGCATTCC TATTGGAAGG 
450
AAAATCGATC TGAATGCTCA TAAATGCTAT GAATCATTGT CAAACACTCT 
500
AGAGGAAATG TTTCTGAAAC CTAAATTAGG TTCACGCACA CTAGAAACCG 
550
ATGGTCACAT GGAAACACCG GTCAAGATAC TACCAGATGG GTCTTCCGGA 
600
TTAGTACTAA CGTATGAAGA CAAGGAAGGA GATTGGATGC TTGTTGGCGA 
650
TGTTCCGTGG GGGATGTTTA TTGGTTCAGT GAGAAGGCTC CGGATAATGA 
700
AAACATCGGA GGCTACTGGT AAAGCTCAGA TGATATTATG A
750

>AT4G28640.1 longest ORF length:246
MEGGSASGSA SALSNDENLV VSCEDSSSPI GNELELGLTL SLGRKGYRDC 
50
RVYADDSSSS SSSSSLSRAS VIAGIKRTAD SMAATSGQVV GWPPIRTYRM 
100
NSMVNQAKAS ATEDPNLEIS QAVNKNRSDS TKMRNSMFVK VTMDGIPIGR 
150
KIDLNAHKCY ESLSNTLEEM FLKPKLGSRT LETDGHMETP VKILPDGSSG 
200
LVLTYEDKEG DWMLVGDVPW GMFIGSVRRL RIMKTSEATG KAQMIL
250