fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G28790 bHLH023 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)

>AT4G28790.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, HindIII, HpaI, KpnI, NheI, NotI, PacI, PstI, PvuII, SalI, SmaI, SpeI, XbaI
Name Recognition sequence Cut positions
BglII A|GATCT 934
EcoRV GAT|ATC 76, 730
NcoI C|CATGG 1073
NdeI CA|TATG 1123
SacI GAGCT|C 85
StyI C|C[AT][AT]GG 379, 1073, 1111
XhoI C|TCGAG 462


Click here to view TAIR data

>AT4G28790.1 length:1242
ATGACTTGGA AACCGAAGAT GCTTATATTA TCCCATGATC TAATCTCACC 
50
AGAAAAATAC ATCATGGGTG AAGATGATAT CGTGGAGCTC TTAGGGAAGA 
100
GCAGCCAAGT AGTTACAAGT AGCCAGACAC AAACACCCTC TTGCGATCCT 
150
CCTCTCATTC TCCGGGGCAG CGGAAGCGGG GACGGAGAAG GAAATGGTCC 
200
TCTACCGCAG CCTCCGCCTC CCCTGTACCA TCAGCAGAGT CTCTTTATCC 
250
AAGAAGACGA AATGGCTTCT TGGCTTCACC AGCCTAATCG CCAAGATTAT 
300
CTCTACTCCC AACTTCTTTA CTCCGGAGTA GCCTCGACTC ACCCGCAAAG 
350
TTTGGCCTCC CTAGAACCAC CACCACCACC TAGGGCTCAG TACATTCTGG 
400
CGGCGGATAG ACCGACCGGT CATATTTTGG CCGAGAGAAG GGCGGAGAAT 
450
TTTATGAATA TCTCGAGGCA AAGAGGGAAC ATATTTCTTG GCGGTGTTGA 
500
AGCTGTACCG TCGAACTCGA CCCTGTTGTC TTCAGCCACT GAATCAATAC 
550
CAGCGACTCA CGGCACCGAG AGTCGAGCAA CAGTCACTGG CGGAGTATCT 
600
CGTACTTTTG CAGTTCCTGG TCTTGGTCCG AGGGGAAAGG CGGTGGCGAT 
650
TGAGACGGCG GGAACACAAT CTTGGGGGTT GTGCAAGGCC GAAACAGAGC 
700
CGGTTCAGAG ACAACCAGCG ACGGAGACGG ATATCACCGA TGAACGGAAG 
750
AGAAAAACGA GAGAGGAAAC AAATGTCGAA AACCAGGGAA CTGAAGAAGC 
800
TCGTGATTCG ACGTCTAGTA AGAGGTCACG AGCTGCAATA ATGCATAAAC 
850
TCTCCGAAAG GAGACGGAGA CAAAAGATTA ACGAGATGAT GAAGGCTTTG 
900
CAAGAACTCC TTCCTCGCTG CACAAAGACT GATAGATCTT CCATGCTGGA 
950
TGATGTTATA GAGTACGTGA AATCTCTACA GAGCCAAATA CAGATGTTCT 
1000
CAATGGGACA TGTTATGATT CCACCGATGA TGTATGCGGG GAATATACAA 
1050
CAACAGTACA TGCCCCACAT GGCCATGGGT ATGAATCGGC CTCCTGCATT 
1100
CATACCTTTC CCTAGGCAGG CTCATATGGC GGAAGGTGTA GGTCCTGTTG 
1150
ATTTATTTAG AGAGAATGAA GAAACAGAGC AAGAGACAAT GTCTCTTCTC 
1200
CTTAGAGAAG ACAAAAGAAC AAAACAGAAA ATGTTTTCTT GA
1250

>AT4G28790.1 longest ORF length:413
MTWKPKMLIL SHDLISPEKY IMGEDDIVEL LGKSSQVVTS SQTQTPSCDP 
50
PLILRGSGSG DGEGNGPLPQ PPPPLYHQQS LFIQEDEMAS WLHQPNRQDY 
100
LYSQLLYSGV ASTHPQSLAS LEPPPPPRAQ YILAADRPTG HILAERRAEN 
150
FMNISRQRGN IFLGGVEAVP SNSTLLSSAT ESIPATHGTE SRATVTGGVS 
200
RTFAVPGLGP RGKAVAIETA GTQSWGLCKA ETEPVQRQPA TETDITDERK 
250
RKTREETNVE NQGTEEARDS TSSKRSRAAI MHKLSERRRR QKINEMMKAL 
300
QELLPRCTKT DRSSMLDDVI EYVKSLQSQI QMFSMGHVMI PPMMYAGNIQ 
350
QQYMPHMAMG MNRPPAFIPF PRQAHMAEGV GPVDLFRENE ETEQETMSLL 
400
LREDKRTKQK MFS
450