fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G28800 bHLH056 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)

>AT4G28800.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NheI, NotI, PacI, PvuII, SacI, SalI, SmaI, SpeI, XhoI
Name Recognition sequence Cut positions
NcoI C|CATGG 717, 986
NdeI CA|TATG 979
PstI CTGCA|G 767
StyI C|C[AT][AT]GG 717, 986
XbaI T|CTAGA 748


Click here to view TAIR data

>AT4G28800.1 length:1338
ATGCAATTTG ATGAGTCTGA TGCTAGGGTT TGGATTTGGT TTGAAATTAG 
50
GCGTGAAGAT GATATAGTGG AGCTTTTATG GCAAAGCGGC CAAGTAGTTG 
100
GAACCAACCA AACACATAGA CAATCCTACG ATCCTCCTCC CATTCTCCGC 
150
GGCAGCGGAA GTGGCAGAGG AGAAGAAAAT GCTCCCCTTT CACAACCTCC 
200
GCCTCACCTG CATCAGCAAA ATCTCTTCAT TCAAGAAGGC GAAATGTATT 
250
CGTGGCTACA CCATTCTTAC CGCCAAAACT ATTTCTGCTC AGAACTTCTC 
300
AACTCCACTC CGGCTACTCA CCCGCAAAGT TCCATCTCTC TGGCACCACG 
350
TCAGACTATC GCCACGAGAA GGGCGGAAAA CTTTATGAAC TTCTCGTGGC 
400
TAAGAGGGAA CATATTTACC GGCGGTAGAG TTGATGAAGC TGGACCGTCG 
450
TTTTCGGTGG TAAGAGAATC GATGCAGGTA GGCTCGAACA CGACCCCCCC 
500
TTCTTCTTCT GCCACTGAAT CATGTGTAAT ACCAGCTACA GAGGGCACCG 
550
CGAGTCGAGT GTCGGGAACT TTGGCAGCTC ATGATCTTGG TCGGAAGGGA 
600
AAGGCGGTGG CGGTTGAGGC GGCCGGAACA CCATCTTCAG GAGTGTGCAA 
650
GGCCGAAACA GAGCCGGTTC AGATACAACC AGCAACGGAG TCGAAGCTAA 
700
AAGCGAGAGA AGAAACCCAT GGAACTGAAG AAGCTCGTGG TTCAACGTCT 
750
AGAAAGAGAT CACGAACTGC AGAAATGCAT AACCTCGCCG AAAGGAGAAG 
800
GAGAGAAAAG ATCAACGAGA AGATGAAGAC TCTGCAACAA CTCATTCCTC 
850
GCTGCAACAA GTCTACTAAA GTTTCAACGC TGGATGATGC TATCGAGTAC 
900
GTCAAATCGT TACAGAGCCA AATACAAGGT ATGATGTCGC CAATGATGAA 
950
TGCCGGGAAT ACGCAACAGT TCATGCCCCA TATGGCCATG GATATGAACC 
1000
GACCTCCTCC ATTCATACCT TTCCCCGGCA CATCTTTTCC TATGCCGGCT 
1050
CAAATGGCAG GTGTAGGTCC ATCATATCCA GCACCGCGCT ACCCTTTTCC 
1100
CAACATTCAG ACCTTTGACC CATCCAGAGT CCGTTTACCA AGCCCGCAGC 
1150
CTAACCCGGT GTCGAACCAG CCTCAGTTTC CGGCTTACAT GAATCCCTAT 
1200
AGCCAGTTTG CTGGTCCCCA CCAGTTGCAA CAACCTCCTC CTCCTCCATT 
1250
TCAGGGTCAA ACAACATCAC AACTGAGTTC CGGGCAGGCA AGTAGTAGCA 
1300
AGGAACCTGA GGATCAGGAG AACCAACCAA CAGCTTAG
1350

>AT4G28800.1 longest ORF length:445
MQFDESDARV WIWFEIRRED DIVELLWQSG QVVGTNQTHR QSYDPPPILR 
50
GSGSGRGEEN APLSQPPPHL HQQNLFIQEG EMYSWLHHSY RQNYFCSELL 
100
NSTPATHPQS SISLAPRQTI ATRRAENFMN FSWLRGNIFT GGRVDEAGPS 
150
FSVVRESMQV GSNTTPPSSS ATESCVIPAT EGTASRVSGT LAAHDLGRKG 
200
KAVAVEAAGT PSSGVCKAET EPVQIQPATE SKLKAREETH GTEEARGSTS 
250
RKRSRTAEMH NLAERRRREK INEKMKTLQQ LIPRCNKSTK VSTLDDAIEY 
300
VKSLQSQIQG MMSPMMNAGN TQQFMPHMAM DMNRPPPFIP FPGTSFPMPA 
350
QMAGVGPSYP APRYPFPNIQ TFDPSRVRLP SPQPNPVSNQ PQFPAYMNPY 
400
SQFAGPHQLQ QPPPPPFQGQ TTSQLSSGQA SSSKEPEDQE NQPTA
450