Locus |
Common name |
Short description |
AT4G29080 |
IAA27, PAP2 |
indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) |
>AT4G29080.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SmaI, SpeI, XbaI, XhoI
Name |
Recognition sequence |
Cut positions |
BamHI
| G|GATCC |
280 |
NcoI
| C|CATGG |
56 |
SacI
| GAGCT|C |
396, 631, 858 |
SalI
| G|TCGAC |
172, 351 |
StyI
| C|C[AT][AT]GG |
56, 811, 883 |
Click here to view TAIR data
>AT4G29080.1 length:918
ATGTCTGTAT CTGTAGCAGC AGAGCATGAT TACATAGGTT TGTCAGAGTT | 50 |
TCCAACCATG GAAGCAACAA CAATGTCTGA CAAAACCAAA ACCAGAGACA | 100 |
ATAACAACGG TCTCAATTTC AAGGCTACCG AGTTAAGACT CGGTTTACCC | 150 |
GGTTCTGAGT CGCCGGAGCG AGTCGACTCA AGATTCTTGG CTCTCAACAA | 200 |
GAGTAGCTGT CCCGTGTCAG GTGCCAAAAG GGTGTTCTCC GACGCTATTA | 250 |
ACGACTCTAA CAAATGGGTC TTCTCTCCTG GATCCACTAC TGCTACTGGT | 300 |
GATGTCGGCT CGGGTTCTGG TCCCCGTACC TCCGTCGTTA AAGATGGAAA | 350 |
GTCGACAACT TTCACTAAAC CGGCTGTTCC GGTTAAGGAG AAGAAGAGCT | 400 |
CTGCTACAGC TCCAGCTTCA AAAGCACAAG TGGTGGGATG GCCACCAATA | 450 |
AGATCATTCA GGAAGAACTC AATGGCTTCT TCTCAATCTC AGAAACCTGG | 500 |
TAATAACTCA GAGACTGAAG AAGCAGAAGC TAAGTCTGGA CCAGAACAAC | 550 |
CTTGCTTGTA TGTCAAAGTG AGTATGGAAG GTGCTCCTTA CTTGAGGAAA | 600 |
ATCGATCTCA AGACTTACAA AAGCTACCTT GAGCTCTCTT CTGCTCTTGA | 650 |
GAAGATGTTC AGTTGCTTCA CCATTGGTCA GTTTGGTTCT CATGGAGGGT | 700 |
GTGGCAGAGA TGGGTTAAAC GAGAGTCGCT TGACTGATCT CTTGCGTGGT | 750 |
TCTGAGTATG TTGTAACCTA TGAAGATAAA GACAGTGACT GGATGCTGGT | 800 |
CGGAGATGTC CCTTGGGAAA TGTTTATATG CTCCTGCAAG AAGCTGAGAA | 850 |
TCATGAAGAG CTCTGAGGCT ATCGGCTTAG CTCCAAGGGT GATGGAGAAG | 900 |
TGCAGAAGCA GGAACTAG | 950 |
>AT4G29080.1 longest ORF length:305
MSVSVAAEHD YIGLSEFPTM EATTMSDKTK TRDNNNGLNF KATELRLGLP | 50 |
GSESPERVDS RFLALNKSSC PVSGAKRVFS DAINDSNKWV FSPGSTTATG | 100 |
DVGSGSGPRT SVVKDGKSTT FTKPAVPVKE KKSSATAPAS KAQVVGWPPI | 150 |
RSFRKNSMAS SQSQKPGNNS ETEEAEAKSG PEQPCLYVKV SMEGAPYLRK | 200 |
IDLKTYKSYL ELSSALEKMF SCFTIGQFGS HGGCGRDGLN ESRLTDLLRG | 250 |
SEYVVTYEDK DSDWMLVGDV PWEMFICSCK KLRIMKSSEA IGLAPRVMEK | 300 |
CRSRN | 350 |
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