fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G29080 IAA27, PAP2 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1)

>AT4G29080.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 280
NcoI C|CATGG 56
SacI GAGCT|C 396, 631, 858
SalI G|TCGAC 172, 351
StyI C|C[AT][AT]GG 56, 811, 883


Click here to view TAIR data

>AT4G29080.1 length:918
ATGTCTGTAT CTGTAGCAGC AGAGCATGAT TACATAGGTT TGTCAGAGTT 
50
TCCAACCATG GAAGCAACAA CAATGTCTGA CAAAACCAAA ACCAGAGACA 
100
ATAACAACGG TCTCAATTTC AAGGCTACCG AGTTAAGACT CGGTTTACCC 
150
GGTTCTGAGT CGCCGGAGCG AGTCGACTCA AGATTCTTGG CTCTCAACAA 
200
GAGTAGCTGT CCCGTGTCAG GTGCCAAAAG GGTGTTCTCC GACGCTATTA 
250
ACGACTCTAA CAAATGGGTC TTCTCTCCTG GATCCACTAC TGCTACTGGT 
300
GATGTCGGCT CGGGTTCTGG TCCCCGTACC TCCGTCGTTA AAGATGGAAA 
350
GTCGACAACT TTCACTAAAC CGGCTGTTCC GGTTAAGGAG AAGAAGAGCT 
400
CTGCTACAGC TCCAGCTTCA AAAGCACAAG TGGTGGGATG GCCACCAATA 
450
AGATCATTCA GGAAGAACTC AATGGCTTCT TCTCAATCTC AGAAACCTGG 
500
TAATAACTCA GAGACTGAAG AAGCAGAAGC TAAGTCTGGA CCAGAACAAC 
550
CTTGCTTGTA TGTCAAAGTG AGTATGGAAG GTGCTCCTTA CTTGAGGAAA 
600
ATCGATCTCA AGACTTACAA AAGCTACCTT GAGCTCTCTT CTGCTCTTGA 
650
GAAGATGTTC AGTTGCTTCA CCATTGGTCA GTTTGGTTCT CATGGAGGGT 
700
GTGGCAGAGA TGGGTTAAAC GAGAGTCGCT TGACTGATCT CTTGCGTGGT 
750
TCTGAGTATG TTGTAACCTA TGAAGATAAA GACAGTGACT GGATGCTGGT 
800
CGGAGATGTC CCTTGGGAAA TGTTTATATG CTCCTGCAAG AAGCTGAGAA 
850
TCATGAAGAG CTCTGAGGCT ATCGGCTTAG CTCCAAGGGT GATGGAGAAG 
900
TGCAGAAGCA GGAACTAG
950

>AT4G29080.1 longest ORF length:305
MSVSVAAEHD YIGLSEFPTM EATTMSDKTK TRDNNNGLNF KATELRLGLP 
50
GSESPERVDS RFLALNKSSC PVSGAKRVFS DAINDSNKWV FSPGSTTATG 
100
DVGSGSGPRT SVVKDGKSTT FTKPAVPVKE KKSSATAPAS KAQVVGWPPI 
150
RSFRKNSMAS SQSQKPGNNS ETEEAEAKSG PEQPCLYVKV SMEGAPYLRK 
200
IDLKTYKSYL ELSSALEKMF SCFTIGQFGS HGGCGRDGLN ESRLTDLLRG 
250
SEYVVTYEDK DSDWMLVGDV PWEMFICSCK KLRIMKSSEA IGLAPRVMEK 
300
CRSRN
350