fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G29190 AtOZF2 Arabidopsis thaliana oxidation-related zinc finger 2, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)

>AT4G29190.1 CDS map

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Uncut enzymes: Acc65I, AccI, AciI, AclI, AfeI, AflII, AflIII, AgeI, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvrII, BaeI, BalI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsmAI, BsmBI, BsmFI, BsmI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BsrI, BssHII, BstAPI, BstBI, BstEII, BstF5I, BstZ17I, Bsu36I, BtrI, BtsI, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HincII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, NaeI, , NarI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflMI, PleI, PmeI, PmlI, PshAI, PsiI, PspOMI, PstI, PvuI, RsrII, SacI, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SspI, StuI, SwaI, TliI, XbaI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AatII GACGT|C 730
AccII(FnuDII) CG|CG 962
AccIII(BspMII) T|CCGGA 174, 201, 500, 1011
AhdI GACNNN|NNGTC 299, 588, 672
AluI AG|CT 66, 127, 325, 454, 534, 615, 661, 945
AlwNI CAGNNN|CTG 694, 847
ApoI Pu|AATTPy 506, 750, 1020
AvaI C|PyCGPuG 709
AvaII G|G[AT]CC 198, 831
BamHI G|GATCC 171, 1008
BanII GPuGCPy|C 558
BfaI C|TAG 603
BsaBI GATNN|NNATC 1013
BsaHI GPu|CGPyC 730
BsaJI C|CNNGG 49, 343, 816, 835, 871, 1004
BsaWI [AT]|CCGG[AT] 93, 168, 174, 201, 500, 528, 630, 1011
BsiHKAI G[AT]GC[AT]|C 269
BsiWI C|GTACG 305
BslI CCNNNNN|NNGG 636, 798, 871, 1010, 1041
BsoBI C|PyCGPuG 709
Bsp1286I G[GAT]GC[CAT]|C 269, 558
BspDI AT|CGAT 214, 822
BspEI T|CCGGA 174, 201, 500, 1011
BspHI T|CATGA 285
BsrFI Pu|CCGGPy 54
BssKI |CCNGG 185, 315, 834, 870, 1004
BssSI C|TCGTG 272
BstNI CC|[AT]GG 834, 870, 1004
BstUI CG|CG 962
BstXI CCANNNNN|NTGG 360
BstYI Pu|GATCPy 171, 189, 339, 1008
BtgI C|CPuPyGG 49, 816
Cac8I GCN|NGC 119, 328
Cfr10I [AG]|CCGG[TC] 54
ClaI AT|CGAT 214, 822
DdeI C|TNAG 469, 537, 688, 696
DpnI GA-CH3|TC 4, 170, 188, 338, 530, 702, 819, 823, 992, 1007, 1013
DpnII |GATC 4, 170, 188, 338, 530, 702, 819, 823, 992, 1007, 1013
EaeI Py|GGCCPu 52, 276
EcoO109I PuG|GNCCPy 832
Fnu4HI GC|NGC 143, 394
HaeIII GG|CC 51, 275
HhaI GCG|C 961
HinP1I G|CGC 961
HindIII A|AGCTT 128
HinfI G|ANTC 177, 204, 281, 408, 573, 596, 653, 666, 672, 686, 698, 802, 875, 933
HpaII C|CGG 53, 92, 167, 173, 185, 200, 277, 315, 331, 499, 527, 629, 1010
Hpy188I TCN|GA 7, 78, 341, 554, 593, 669, 680, 799, 1016, 1053
Hpy99I CG[AT]CG| 76, 728
HpyCH4III ACN|GT 33, 463, 484, 493, 755
HpyCH4IV A|CGT 74, 582, 729
HpyCH4V TG|CA 141, 395, 972, 986
MboI |GATC 4, 170, 188, 338, 530, 702, 819, 823, 992, 1007, 1013
MseI T|TAA 759
MspA1I C[AC]G|C[GT]G 616
MspI C|CGG 53, 92, 167, 173, 185, 200, 277, 315, 331, 499, 527, 629, 1010
MwoI GCNNNNN|NNGC 152
N.BstNBI GAGTCNNNN|N 182, 286, 658, 677, 703, 938
NciI CC|[CG]GG 185, 315
NcoI C|CATGG 49
NlaIII CATG| 48, 118, 225, 284, 425, 988, 1063
NlaIV GGN|NCC 171, 198, 557, 831, 1008, 1032
NspI PuCATG|Py 119
PflFI GACN|NNGTC 690
PpuMI PuG|G[AT]CCPy 832
PspGI |CC[AT]GG 834, 870, 1004
PvuII CAG|CTG 616
RsaI GT|AC 56, 244, 304, 349, 363, 465
Sau3AI |GATC 4, 170, 188, 338, 530, 702, 819, 823, 992, 1007, 1013
Sau96I G|GNCC 198, 831
ScrFI CC|NGG 185, 315, 834, 870, 1004
SphI GCATG|C 119
StyI C|C[AT][AT]GG 49
Taqƒ¿I T|CGA 213, 435, 620, 700, 719, 821, 994
TfiI G|A[AT]TC 204, 573, 596, 802, 875
TseI G|C[AT]GC 143, 394
Tsp45I |GT[CG]AC 406, 692
Tsp509I |AATT 505, 749, 761, 983, 1019
TspRI NNCA[CG]TGNN| 34, 696
Tth111I GACN|NNGTC 690


Click here to view TAIR data

>AT4G29190.1 length:1071
ATGATGATCG GAGAAACTCG CAGGACTTAT CCCACTGTTG AAATACCTCC 
50
ATGGCCGGTA CTTGAAGAGC TTACAACGTC GGAGTTTTTT TCTCCGGTGA 
100
TGAATAGTCC AGATTGTAGC ATGCTTGAAG CTTTGGCGGG GTTGCAGCGT 
150
TATTTGCCGT CTAACGAACC GGATCCGGAG TCATACCCGG ATCTATTGGG 
200
TCCGGATTCA CCAATCGATG CTTACTCATG CGACCATTTC CGTATGTACG 
250
ATTTCAAAGT CAGGAGGTGT GCTCGTGGCC GGAGTCATGA TTGGACGGAG 
300
TGTCCGTACG CTCATCCCGG AGAAAAAGCT CGCCGGAGAG ATCCGAGGAA 
350
GTACCATTAC TCTGGTACGG CTTGTCCTGA TTTTCGTAAA GGTGGCTGCA 
400
AGAAAGGTGA CTCTTGTGAG TTTGCTCATG GTGTTTTCGA GTGTTGGCTT 
450
CATCCAGCTC GTTACCGTAC TCAGCCGTGT AAAGACGGTG GTAACTGTCT 
500
CCGGAAAATT TGTTTCTTTG CTCATTCACC GGATCAGCTT AGGTTTTTAC 
550
ATACTCGGAG CCCTGACAGA GTTGATTCTT TTGACGTTTC GTCTCCGATT 
600
CGTGCTAGAG CATTTCAGCT GTCGATTTCT CCGGTTTCTG GTTCGCCACC 
650
GATGAGTCCA AGAGCTGACT CGGAGTCTTC TCCGATGACT CAGTCACTGA 
700
GTCGATCTCT CGGGTCTTGT TCGATAAACG ACGTCGTTCC TTCGTTTAGG 
750
AATTTACAGT TTAATTCGGT AAAATCATTT CCTCGTAACA ATCCTTTATT 
800
CGGATTCGGG TCGCCCCGTG GATCGATCTT GGGTCCTGGG TTTCAGTCTC 
850
TGCCTACAAC ACCGACCCGA CCAGGGAATC TGGATATTTG GGAGTATGGT 
900
TTGGAGGAAG AACCCGTAAT GGAGCGTGTC GTTGAGTCGG GTCGTGAGCT 
950
ACGAGAAAAG ATGCGCGAGA AACTGCACAA GGAGAATTGC ATGGATCGAG 
1000
TTGCCCAGGA TCCGGATCAG AATTTGGGTG AGGCTCCTGA TGTCGGGTGG 
1050
GTATCTGACC TGCTCATGTA A
1100

>AT4G29190.1 longest ORF length:356
MMIGETRRTY PTVEIPPWPV LEELTTSEFF SPVMNSPDCS MLEALAGLQR 
50
YLPSNEPDPE SYPDLLGPDS PIDAYSCDHF RMYDFKVRRC ARGRSHDWTE 
100
CPYAHPGEKA RRRDPRKYHY SGTACPDFRK GGCKKGDSCE FAHGVFECWL 
150
HPARYRTQPC KDGGNCLRKI CFFAHSPDQL RFLHTRSPDR VDSFDVSSPI 
200
RARAFQLSIS PVSGSPPMSP RADSESSPMT QSLSRSLGSC SINDVVPSFR 
250
NLQFNSVKSF PRNNPLFGFG SPRGSILGPG FQSLPTTPTR PGNLDIWEYG 
300
LEEEPVMERV VESGRELREK MREKLHKENC MDRVAQDPDQ NLGEAPDVGW 
350
VSDLLM
400