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| Locus | Common name | Short description |
| AT4G29940 | PRHA | pathogenesis related homeodomain protein A (.1.2) |
>AT4G29940.1 CDS map
>>Show genomic map
Uncut enzymes: AatII, Acc65I, AccIII(BspMII), AciI, AfeI, AgeI, AhdI, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvrII, BaeI, BalI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BmrI, BpmI, BsaAI, BsaBI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BssHII, BssSI, BstAPI, BstEII, BstXI, BstZ17I, Bsu36I, BtgI, BtrI, Cfr10I, DraIII, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, NaeI, , NarI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NspI, PI-PspI, PI-SceI(VDE), PacI, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PsiI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, SbfI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, Tth111I, XbaI, XmaI
| Name | Recognition sequence | Cut positions |
| AccI | GT|[AC][TG]AC | 75 |
| AccII(FnuDII) | CG|CG | 476 |
| AclI | AA|CGTT | 946 |
| AflII | C|TTAAG | 2085 |
| AflIII | A|CPuPyGT | 637 |
| AluI | AG|CT | 429, 465, 538, 598, 823, 847, 995, 1001, 1398, 1425, 1438, 1464, 1838, 1902, 1983, 2000, 2064, 2081, 2145, 2162 |
| AlwNI | CAGNNN|CTG | 798, 1421, 1577, 1777 |
| ApoI | Pu|AATTPy | 129, 724, 1723 |
| AvaI | C|PyCGPuG | 197, 593 |
| AvaII | G|G[AT]CC | 206, 1209, 1593 |
| BanII | GPuGCPy|C | 440 |
| BclI | T|GATCA | 564 |
| BfaI | C|TAG | 825, 993, 1310, 1805 |
| BglII | A|GATCT | 452 |
| BlpI | GC|TNAGC | 1906, 1987, 2149 |
| BsaHI | GPu|CGPyC | 481 |
| BsaJI | C|CNNGG | 890, 1558 |
| BslI | CCNNNNN|NNGG | 215, 677, 1031, 1928 |
| BsmI | GAATGCN| | 584, 763 |
| BsoBI | C|PyCGPuG | 197, 593 |
| Bsp1286I | G[GAT]GC[CAT]|C | 440 |
| BspDI | AT|CGAT | 367 |
| BspHI | T|CATGA | 561 |
| BsrI | ACTGGN| | 495, 800, 1205, 2256 |
| BssKI | |CCNGG | 404, 442, 699, 1557, 1665, 1715 |
| BstBI | TT|CGAA | 171 |
| BstF5I | GGATGNN| | 203, 883, 895, 1168, 1368, 1651 |
| BstNI | CC|[AT]GG | 1557, 1715 |
| BstUI | CG|CG | 476 |
| BstYI | Pu|GATCPy | 452, 498, 550, 841 |
| BtsI | GCAGTGNN| | 1076, 1912 |
| Cac8I | GCN|NGC | 464 |
| ClaI | AT|CGAT | 367 |
| DdeI | C|TNAG | 133, 504, 1056, 1423, 1467, 1540, 1567, 1905, 1936, 1986, 2148, 2165, 2345 |
| DpnI | GA-CH3|TC | 451, 497, 549, 563, 704, 840, 1035, 1289, 1448, 1475, 2371 |
| DpnII | |GATC | 451, 497, 549, 563, 704, 840, 1035, 1289, 1448, 1475, 2371 |
| DraI | TTT|AAA | 1501, 2284 |
| DrdI | GACNNNN|NNGTC | 2133 |
| EcoRV | GAT|ATC | 808 |
| Fnu4HI | GC|NGC | 353, 940, 1828, 1932 |
| HaeIII | GG|CC | 873, 1046, 1107, 2297 |
| HincII | GTPy|PuAC | 856, 1129, 1769 |
| HindIII | A|AGCTT | 466, 599 |
| HinfI | G|ANTC | 25, 300, 359, 885, 1054, 1239, 1329, 1375, 1469, 1563, 1587, 1791, 2133, 2343 |
| HpaI | GTT|AAC | 856 |
| HpaII | C|CGG | 403, 442, 699, 1665 |
| Hpy188I | TCN|GA | 398, 543, 843, 879, 1011, 1211, 1242, 1372 |
| Hpy99I | CG[AT]CG| | 479 |
| HpyCH4III | ACN|GT | 852, 925, 1098, 1125, 1139, 1572, 1656, 1772 |
| HpyCH4IV | A|CGT | 635, 945, 1402, 2259 |
| HpyCH4V | TG|CA | 312, 351, 370, 461, 577, 584, 719, 734, 763, 1168, 1176, 1246, 1387, 1414, 1456 |
| MboI | |GATC | 451, 497, 549, 563, 704, 840, 1035, 1289, 1448, 1475, 2371 |
| MseI | T|TAA | 237, 305, 339, 455, 855, 1500, 1841, 2003, 2084, 2283 |
| MslI | CAPyNN|NNPuTG | 343 |
| MspA1I | C[AC]G|C[GT]G | 2093 |
| MspI | C|CGG | 403, 442, 699, 1665 |
| MwoI | GCNNNNN|NNGC | 143, 718, 1115, 1837, 2080 |
| N.BstNBI | GAGTCNNNN|N | 1474, 2138 |
| NciI | CC|[CG]GG | 404, 442, 699, 1665 |
| NlaIII | CATG| | 520, 560, 1038, 1606, 1701, 1814, 1895, 1976, 2057, 2138 |
| NlaIV | GGN|NCC | 206, 1209 |
| NsiI | ATGCA|T | 371 |
| PaeR7I | C|TCGAG | 593 |
| PshAI | GACNN|NNGTC | 1208 |
| PspGI | |CC[AT]GG | 1557, 1715 |
| RsaI | GT|AC | 190, 1144, 2088 |
| Sau3AI | |GATC | 451, 497, 549, 563, 704, 840, 1035, 1289, 1448, 1475, 2371 |
| Sau96I | G|GNCC | 206, 1107, 1209, 1593 |
| ScaI | AGT|ACT | 191 |
| ScrFI | CC|NGG | 404, 442, 699, 1557, 1665, 1715 |
| SfcI | C|TPuPyAG | 851, 1853, 2015 |
| SmlI | C|TPyPuAG | 433, 593, 999, 2085 |
| StyI | C|C[AT][AT]GG | 890 |
| Taqƒ¿I | T|CGA | 170, 366, 592, 643, 750, 1357 |
| TfiI | G|A[AT]TC | 25, 300, 359, 1239, 1329, 1563, 1587, 1791 |
| TliI | C|TCGAG | 593 |
| TseI | G|C[AT]GC | 353, 940, 1828, 1932 |
| Tsp45I | |GT[CG]AC | 2135, 2262 |
| Tsp509I | |AATT | 67, 128, 587, 723, 739, 745, 769, 1722, 1834, 2208, 2315 |
| TspRI | NNCA[CG]TGNN| | 1076, 1524, 1621, 1657, 1912 |
| XcmI | CCANNNNN|NNNNTGG | 494 |
| XhoI | C|TCGAG | 593 |
| XmnI | GAANN|NNTTC | 602 |
Click here to view TAIR data
>AT4G29940.1 length:2391
ATGGAGGAGA GTGAAACAAA GGGGAGAATC AGTCAAGAAA CTGATAAGGC | 50 |
TTGTGTTTCA GTTGAGAGAA TTGGGTCTAC TTTACTCTCA TCATTTGTGA | 100 |
AGAAAGGTAA AGAAGTATCA AATAAGAGAA ATTCTAAGCA GAATAAGCGA | 150 |
AAAGCGGAAG AAGAACTCTG TTCGAAATCA AGAACCAAGA AGTACTCTCG | 200 |
GGGATGGGTC CGTTGTGAGG AAATGGAGGA GGAGAAGGTT AAGAAAACAA | 250 |
GAAAGAGGAA AAGTAAGAGA CAGCAAAAGG ATAATAAGGT TGAGGTTGAT | 300 |
GATTCTTTAA GGTTGCAAAG GAGGACAAGG TATTTGCTCA TTAAGATGAA | 350 |
GATGCAGCAG AATCTTATCG ATGCATACGC AACTGAAGGT TGGAAAGGTC | 400 |
AGAGCCGGGA AAAGATAAGA CCAGACAAGG AGCTTGAGAG AGCCCGGAAA | 450 |
GAGATCTTAA ACTGCAAGCT TGGACTACGC GACGCCATTC GCCAACTGGA | 500 |
TCTGCTTAGT TCTGTGGGAA GCATGGAAGA GAAAGTGATA GCTTCAGATG | 550 |
GATCTATTCA TCATGATCAT ATATTTTGTG CAGAATGCAA TTCTCGAGAA | 600 |
GCTTTTCCAG ACAATGATAT AATACTTTGT GATGGAACGT GTAATCGAGC | 650 |
ATTTCACCAG AAATGCCTTG ACCCTCCTTT GGAAACAGAA AGCATACCTC | 700 |
CCGGAGATCA GGGCTGGTTT TGCAAATTTT GTGATTGCAA AATTGAAATT | 750 |
ATCGACACAA TGAATGCACA AATTGGAACT CATTTCCCTG TGGACAGCAA | 800 |
CTGGCAGGAT ATCTTCAATG AAGAAGCTAG TCTTCCTATT GGATCTGAAG | 850 |
CTACAGTTAA CAATGAAGCA GATTGGCCTT CGGATGACTC CAAGGATGAT | 900 |
GATTATGACC CTGAAATGAG GGAAAACGGT GGAGGAAACA GCAGCAACGT | 950 |
TAGTGGTGAT GGTGGTGGTG ATAACGATGA AGAAAGCATT TCAACTAGCT | 1000 |
TGAGCTTATC ATCTGATGGT GTTGCCCTTT CAACGGGATC ATGGGAAGGC | 1050 |
CATAGACTCA GCAATATGGT GGAGCAGTGC GAAACAAGTA ATGAAGAAAC | 1100 |
TGTATGTGGG CCAAGACAGC GAAGGACTGT TGACTATACA CAGTTGTACT | 1150 |
ATGAAATGTT TGGAAAGGAT GCAGTTTTGC AAGAGCAAGG TAGTGAAGAT | 1200 |
GAAGACTGGG GTCCGAATGA CAGAAGGAAG AGAAAAAGGG AATCTGATGC | 1250 |
AGGAAGCACA CTTGTAACTA TGTGTGAAAG CAGTAAGAAA GATCAAGATG | 1300 |
TTGTAGAAAC GCTAGAACAG AGTGAGAGAG ATTCTGTCTC TGTGGAAAAT | 1350 |
AAAGGAGGTC GAAGGCGGAT GTTCAGACTC CCAAGAAATG CAGTTGAGAA | 1400 |
GCTACGTCAA GTATTTGCAG AGACTGAGCT TCCCTCAAAA GCTGTGAGGG | 1450 |
ATCGTCTTGC AAAAGAGCTG AGTCTTGATC CAGAGAAGGT CAATAAATGG | 1500 |
TTTAAAAATA CTCGGTATAT GGCACTGCGG AATAGGAAGA CTGAGAGCGT | 1550 |
GAAACAACCT GGGGATTCTA AGACAGTCTC TGGAGGAGAT TCTGGACCAG | 1600 |
AAGCAGTCAT GGAGAACAAC ACTGAAACAA ATGAAGTTCA AGATACTTTG | 1650 |
GATGACACTG TTCCACCCGG ATTTGACGCT ACAAATCAAA ACATACTCTC | 1700 |
CCCATGTAAT AACAACCAGG AGGAATTTCA ACAGGAAAAT GTCTCTTTTC | 1750 |
CTTCACCCAC AGATGAAAGT CAACAGTATC TGGAACAAAA CGATTCTTCT | 1800 |
TTCGTTCTAG TGCCACATGA AAAGCAAAGC AGCGAAATTA GCTTAAAGAC | 1850 |
GGCTGTAGAG GAGAATGAGA CAGAAAGCAA GATGATGAAA GAGCCACATG | 1900 |
AAGAGCTAAG CAGTGAAATG AGCCTAAAGA CGGCTGCTGA GGAGAAGGAG | 1950 |
ACAGAGAGCA AGATGATAGA AGAGCCACAT GAAGAGCTAA GCAGAGAAAT | 2000 |
GAGCTTAAAG ACGGCTGTAG AGGAGAAGGA GACAGAGAGC AAGATGATGG | 2050 |
AAGAGCCACA TGATGAGCTA AACAGCGAAA TGAGCTTAAG TACAGCGGTA | 2100 |
GAGGAGAAGG AGACAGGGAG CAAGATGACG GAAGAGTCAC ATGAAGAGCT | 2150 |
AAGCAACGAA ATGAGCTTAG AAGAGAAGGA GACGGGGAGA AAGATGACGG | 2200 |
AAGAGGAAGA ATTGGAAGCA GTAATGGAGA TGCTTTGTAG AACAGAAAAC | 2250 |
AAGTTACTGG ACGTGACGCA GAGGCTTGAT AGATTTAAAA CACCAAAAGG | 2300 |
CCGAAAAAAG TTAGGCAATT CTTCTTCTCC TTTACTTGAA GAAGACTCAG | 2350 |
TAGTGTATGT TCCAATAGCA GAGATCAAGG AGAAAAGGTA A | 2400 |
>AT4G29940.1 longest ORF length:796
MEESETKGRI SQETDKACVS VERIGSTLLS SFVKKGKEVS NKRNSKQNKR | 50 |
KAEEELCSKS RTKKYSRGWV RCEEMEEEKV KKTRKRKSKR QQKDNKVEVD | 100 |
DSLRLQRRTR YLLIKMKMQQ NLIDAYATEG WKGQSREKIR PDKELERARK | 150 |
EILNCKLGLR DAIRQLDLLS SVGSMEEKVI ASDGSIHHDH IFCAECNSRE | 200 |
AFPDNDIILC DGTCNRAFHQ KCLDPPLETE SIPPGDQGWF CKFCDCKIEI | 250 |
IDTMNAQIGT HFPVDSNWQD IFNEEASLPI GSEATVNNEA DWPSDDSKDD | 300 |
DYDPEMRENG GGNSSNVSGD GGGDNDEESI STSLSLSSDG VALSTGSWEG | 350 |
HRLSNMVEQC ETSNEETVCG PRQRRTVDYT QLYYEMFGKD AVLQEQGSED | 400 |
EDWGPNDRRK RKRESDAGST LVTMCESSKK DQDVVETLEQ SERDSVSVEN | 450 |
KGGRRRMFRL PRNAVEKLRQ VFAETELPSK AVRDRLAKEL SLDPEKVNKW | 500 |
FKNTRYMALR NRKTESVKQP GDSKTVSGGD SGPEAVMENN TETNEVQDTL | 550 |
DDTVPPGFDA TNQNILSPCN NNQEEFQQEN VSFPSPTDES QQYLEQNDSS | 600 |
FVLVPHEKQS SEISLKTAVE ENETESKMMK EPHEELSSEM SLKTAAEEKE | 650 |
TESKMIEEPH EELSREMSLK TAVEEKETES KMMEEPHDEL NSEMSLSTAV | 700 |
EEKETGSKMT EESHEELSNE MSLEEKETGR KMTEEEELEA VMEMLCRTEN | 750 |
KLLDVTQRLD RFKTPKGRKK LGNSSSPLLE EDSVVYVPIA EIKEKR | 800 |