fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G30080 ARF16 auxin response factor 16 (.1)

>AT4G30080.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, EcoRV, KpnI, NdeI, NotI, PacI, PstI, SacI, SalI, SmaI, SpeI, XbaI
Name Recognition sequence Cut positions
BglII A|GATCT 636
HindIII A|AGCTT 589, 1570
HpaI GTT|AAC 1129
NcoI C|CATGG 185
NheI G|CTAGC 889
PvuII CAG|CTG 1028
StyI C|C[AT][AT]GG 185, 1069
XhoI C|TCGAG 926


Click here to view TAIR data

>AT4G30080.1 length:2013
ATGATAAATG TGATGAATCC AATGAAAGGT GGAACAGAGA AAGGTTTAGA 
50
TCCTCAGCTA TGGCATGCAT GTGCTGGTGG TATGGTTCGT ATGCCTCCTA 
100
TGAACTCTAA AGTCTTTTAC TTTCCTCAAG GTCACGCCGA AAACGCTTAC 
150
GATTGTGTCG ATTTCGGTAA TCTCCCTATT CCTCCCATGG TTTTGTGTCG 
200
TGTTTTAGCC ATTAAGTATA TGGCTGATGC TGAATCTGAC GAGGTTTTCG 
250
CTAAACTGAG ATTGATTCCT TTGAAAGATG ATGAGTATGT TGATCACGAG 
300
TATGGTGATG GTGAAGATAG TAACGGTTTC GAGAGTAATA GTGAGAAAAC 
350
GCCTTCGTTT GCTAAGACTT TGACTCAGTC TGATGCTAAT AACGGTGGGG 
400
GTTTCTCTGT TCCTCGTTAT TGCGCTGAGA CGATTTTCCC GAGGTTGGAT 
450
TATAACGCCG AGCCGCCGGT TCAGACCATT CTTGCTAAGG ATGTTCATGG 
500
TGATGTTTGG AAGTTCAGAC ATATTTATAG AGGGACGCCT CGGCGTCACC 
550
TTCTTACAAC CGGATGGAGT AATTTTGTAA ACCAGAAGAA GCTTGTGGCG 
600
GGAGATTCGA TTGTCTTCAT GAGAGCGGAG AATGGAGATC TTTGTGTAGG 
650
TATTAGGAGG GCTAAGAGAG GAGGGATAGG TAATGGACCC GAATATTCAG 
700
CGGGTTGGAA TCCGATCGGT GGAAGTTGCG GCTACTCTTC TCTGTTAAGG 
750
GAAGATGAAA GCAATAGTTT GAGGAGAAGT AATTGTTCCC TTGCGGATAG 
800
GAAGGGGAAA GTGACGGCTG AATCTGTTAT AGAAGCAGCC ACTCTTGCTA 
850
TTAGCGGAAG ACCGTTTGAG GTTGTGTACT ATCCGAGAGC TAGCACTTCA 
900
GAGTTTTGTG TCAAGGCATT AGATGCTCGA GCTGCCATGC GGATTCCGTG 
950
GTGCTCAGGT ATGAGGTTTA AGATGGCTTT TGAGACAGAG GATTCGTCTC 
1000
GGATAAGTTG GTTTATGGGG ACTGTTTCAG CTGTTAATGT CTCTGATCCT 
1050
ATCCGTTGGC CTAACTCTCC TTGGCGGCTT CTACAGGTGG CGTGGGATGA 
1100
GCCAGATTTA CTCCAAAACG TGAAGCGAGT TAACCCGTGG TTGGTGGAAT 
1150
TGGTATCAAA CGTACATCCG ATCCCGCTTA CTTCGTTTTC GCCACCGAGG 
1200
AAAAAGATGC GGCTACCTCA GCATCCAGAT TACAACAATC TGATCAATTC 
1250
GATTCCAGTA CCTTCATTCC CAAGCAATCC CCTTATTAGA TCAAGCCCGT 
1300
TAAGCTCTGT TCTGGACAAT GTTCCCGTGG GTTTACAGGG AGCCAGGCAT 
1350
AATGCTCATC AGTACTACGG GTTATCATCT TCGGATCTTC ACCATTACTA 
1400
CTTGAATAGA CCACCTCCTC CTCCTCCTCC ATCCTCTCTC CAACTTTCTC 
1450
CTTCTCTCGG TCTCCGAAAC ATCGATACCA AAAACGAAAA AGGATTTTGC 
1500
TTTTTGACAA TGGGAACAAC ACCATGCAAT GATACCAAAT CTAAAAAGTC 
1550
CCATATTGTA TTGTTCGGCA AGCTTATACT ACCCGAGGAA CAGCTATCAG 
1600
AAAAAGGCTC AACGGATACC GCAAACATAG AGAAAACGCA GATTTCATCA 
1650
GGCGGGTCGA ACCAAAACGG CGTTGCGGGA AGGGAGTTTT CTTCGTCAGA 
1700
TGAAGGATCA CCTTGCTCTA AGAAAGTTCA TGATGCATCA GGTTTGGAAA 
1750
CAGGGCATTG TAAAGTGTTT ATGGAGTCAG ACGATGTAGG TCGAACCTTA 
1800
GACCTATCGG TTCTTGGTTC ATACGAAGAA TTGAGTCGGA AACTCTCTGA 
1850
CATGTTTGGA ATCAAAAAGT CTGAGATGTT AAGCTCTGTT CTCTATAGGG 
1900
ATGCATCAGG AGCCATCAAA TACGCAGGAA ACGAACCTTT CAGTGAGTTC 
1950
TTGAAGACAG CTCGAAGATT GACAATTCTG ACGGAACAAG GAAGTGAGAG 
2000
CGTTGTAGTA TAA
2050

>AT4G30080.1 longest ORF length:670
MINVMNPMKG GTEKGLDPQL WHACAGGMVR MPPMNSKVFY FPQGHAENAY 
50
DCVDFGNLPI PPMVLCRVLA IKYMADAESD EVFAKLRLIP LKDDEYVDHE 
100
YGDGEDSNGF ESNSEKTPSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD 
150
YNAEPPVQTI LAKDVHGDVW KFRHIYRGTP RRHLLTTGWS NFVNQKKLVA 
200
GDSIVFMRAE NGDLCVGIRR AKRGGIGNGP EYSAGWNPIG GSCGYSSLLR 
250
EDESNSLRRS NCSLADRKGK VTAESVIEAA TLAISGRPFE VVYYPRASTS 
300
EFCVKALDAR AAMRIPWCSG MRFKMAFETE DSSRISWFMG TVSAVNVSDP 
350
IRWPNSPWRL LQVAWDEPDL LQNVKRVNPW LVELVSNVHP IPLTSFSPPR 
400
KKMRLPQHPD YNNLINSIPV PSFPSNPLIR SSPLSSVLDN VPVGLQGARH 
450
NAHQYYGLSS SDLHHYYLNR PPPPPPPSSL QLSPSLGLRN IDTKNEKGFC 
500
FLTMGTTPCN DTKSKKSHIV LFGKLILPEE QLSEKGSTDT ANIEKTQISS 
550
GGSNQNGVAG REFSSSDEGS PCSKKVHDAS GLETGHCKVF MESDDVGRTL 
600
DLSVLGSYEE LSRKLSDMFG IKKSEMLSSV LYRDASGAIK YAGNEPFSEF 
650
LKTARRLTIL TEQGSESVVV 
700