fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G32280 IAA29 indole-3-acetic acid inducible 29 (.1)

>AT4G32280.1 CDS map

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Uncut enzymes: AatII, AccI, AccII(FnuDII), AccIII(BspMII), AciI, AclI, AfeI, AflII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaI, AvaII, AvrII, BaeI, BamHI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BfaI, BglI, BlpI, BmrI, BpmI, BsaAI, BsaHI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, Bsp1286I, BspDI, BspEI, BspHI, BspMI, BsrBI, BsrDI, BsrFI, BsrGI, BssHII, BssKI, BssSI, BstAPI, BstBI, BstEII, BstNI, BstUI, BstXI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cfr10I, ClaI, DdeI, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HincII, HpaI, HpaII, HphI, I-CeuI, I-SceI, KasI, MboII, MfeI, MluI, MlyI, MnlI, MspA1I, MspI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuII, RsrII, SacI, SacII, SalI, SapI, Sau96I, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TliI, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI
Name Recognition sequence Cut positions
Acc65I G|GTACC 109
AflIII A|CPuPyGT 307
AluI AG|CT 531
BalI TGG|CCA 201, 292
BanI G|GPyPuCC 109
BclI T|GATCA 569
BglII A|GATCT 680
BsaBI GATNN|NNATC 444
BsaJI C|CNNGG 633
BsiEI CGPuPy|CG 83, 724
BslI CCNNNNN|NNGG 49, 634
BspT107I(HgiCI) G|G[TC][AG]CC 109
BsrI ACTGGN| 650
BstF5I GGATGNN| 290, 499, 667
BstYI Pu|GATCPy 9, 225, 680
Cac8I GCN|NGC 203
DpnI GA-CH3|TC 8, 82, 224, 388, 438, 468, 568, 679, 719
DpnII |GATC 8, 82, 224, 388, 438, 468, 568, 679, 719
EaeI Py|GGCCPu 201, 292
EcoRV GAT|ATC 526, 705
Fnu4HI GC|NGC 93
HaeIII GG|CC 200, 291
HindIII A|AGCTT 532
HinfI G|ANTC 234, 240, 549, 690
Hpy188I TCN|GA 237, 701
Hpy99I CG[AT]CG| 133
HpyCH4III ACN|GT 432, 725
HpyCH4IV A|CGT 134
HpyCH4V TG|CA 730
KpnI GGTAC|C 109
MboI |GATC 8, 82, 224, 388, 438, 468, 568, 679, 719
MscI TGG|CCA 201, 292
MseI T|TAA 54, 483, 489, 537, 751
MslI CAPyNN|NNPuTG 377, 397
MwoI GCNNNNN|NNGC 179
N.BstNBI GAGTCNNNN|N 245, 554
NlaIII CATG| 306, 672
NlaIV GGN|NCC 109
NspI PuCATG|Py 307
PciI A|CATGT 307
PvuI CGAT|CG 83
RsaI GT|AC 108
Sau3AI |GATC 8, 82, 224, 388, 438, 468, 568, 679, 719
StyI C|C[AT][AT]GG 633
Taqƒ¿I T|CGA 84, 658, 721
TfiI G|A[AT]TC 234, 690
TseI G|C[AT]GC 93
Tsp45I |GT[CG]AC 646
Tsp509I |AATT 161, 614, 712
XmnI GAANN|NNTTC 695


Click here to view TAIR data

>AT4G32280.1 length:756
ATGGAGTTGG ATCTTGGTCT ATCTCTTTCA CCTCATAAAT CTTCCAAGTT 
50
AGGGTTTAAC TTTGACCTCA ACAAGCATTG TGCGATCGAG GGTGCTGCGT 
100
CTTGTTTGGG TACCGAAAAA CTGCGTTTTG AGGCGACGTT TGGGTTAGGG 
150
AATGTGGAGG AAAATTGTTA TATGCCAAAA CAGCGTTTGT TTGCCTTGAA 
200
TGGCCAGCCC AACGAGGAAG ACGAAGATCC TCTGGAATCC GAGTCTTCAA 
250
TAGTTTACGA TGATGAGGAG GAAAATAGCG AAGTTGTTGG ATGGCCACCA 
300
GTAAAAACAT GTATGATAAA GTATGGTAGT TATCATCATC GTCATATTCG 
350
TAATCACCAT CATTGCCCGT ATCATCATCG TGGTAGGAGG ATCACGGCGA 
400
TGAACAACAA CATATCTAAT CCAACAACGG CTACTGTGGG ATCATCATCT 
450
TCTTCGTCAA TATCATCAAG ATCATCAATG TATGTTAAGG TTAAGATGGA 
500
TGGTGTGGCA ATAGCAAGAA AAGTGGATAT CAAGCTTTTT AACTCTTACG 
550
AGTCCCTCAC TAACTCCTTG ATCACTATGT TTACCGAATA TGAAGATTGC 
600
GACAGAGAAG ATACAAATTA TACATTCACC TTCCAAGGGA AAGAGGGTGA 
650
CTGGCTACTT CGAGGGGATG TTACATGGAA GATCTTTGCG GAATCTGTTC 
700
ATCGGATATC AATAATTAGA GATCGACCGT GTGCATATAC AAGATGTTTG 
750
TTTTAA
800

>AT4G32280.1 longest ORF length:251
MELDLGLSLS PHKSSKLGFN FDLNKHCAIE GAASCLGTEK LRFEATFGLG 
50
NVEENCYMPK QRLFALNGQP NEEDEDPLES ESSIVYDDEE ENSEVVGWPP 
100
VKTCMIKYGS YHHRHIRNHH HCPYHHRGRR ITAMNNNISN PTTATVGSSS 
150
SSSISSRSSM YVKVKMDGVA IARKVDIKLF NSYESLTNSL ITMFTEYEDC 
200
DREDTNYTFT FQGKEGDWLL RGDVTWKIFA ESVHRISIIR DRPCAYTRCL 
250
F
300