fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G33880 RSL2, bHLH085 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1)

>AT4G33880.1 CDS map

>>Show genomic map




Uncut enzymes: AscI, BamHI, EcoRI, EcoRV, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
ApaI GGGCC|C 569
BglII A|GATCT 473
HindIII A|AGCTT 456
NcoI C|CATGG 8
SacI GAGCT|C 984
StyI C|C[AT][AT]GG 8, 147, 165


Click here to view TAIR data

>AT4G33880.1 length:1059
ATGGAAGCCA TGGGAGAATG GAGCAACAAC CTCGGAGGAA TGTACACTTA 
50
TGCAACCGAG GAAGCCGATT TCATGAACCA GCTTCTCGCC TCTTATGATC 
100
ATCCTGGCAC CGGCTCATCC TCCGGCGCAG CAGCCAGTGG TGACCACCAA 
150
GGCTTGTATT GGAACCTTGG TTCTCATCAC AACCACCTTA GCCTCGTGTC 
200
TGAAGCCGGT AGCTTCTGTT TCTCTCAAGA GAGCAGCAGC TACAGCGCTG 
250
GGAACAGCGG ATATTACACC GTTGTTCCAC CCACGGTTGA AGAGAACCAA 
300
AATGAGACAA TGGACTTTGG GATGGAAGAT GTGACCATCA ATACAAACTC 
350
ATACCTTGTT GGTGAGGAGA CAAGTGAGTG TGACGTTGAG AAATACTCTT 
400
CTGGAAAGAC TCTTATGCCT TTGGAAACCG TAGTGGAGAA CCACGATGAC 
450
GAGGAAAGCT TGTTGCAATC TGAGATCTCT GTGACTACTA CAAAATCTCT 
500
CACCGGCTCC AAAAAGAGAT CCCGTGCCAC ATCTACTGAT AAAAACAAGA 
550
GAGCAAGAGT GAATAAGAGG GCCCAGAAGA ACGTAGAGAT GAGTGGGGAT 
600
AACAATGAAG GAGAAGAGGA AGAAGGAGAG ACGAAGTTGA AGAAAAGAAA 
650
GAATGGGGCA ATGATGAGTA GACAGAACTC AAGCACCACT TTCTGTACGG 
700
AGGAAGAATC AAACTGCGCT GATCAAGACG GTGGAGGAGA AGACTCATCC 
750
TCTAAGGAAG ATGATCCCTC AAAGGCCCTC AACCTCAATG GTAAAACAAG 
800
AGCCAGTCGT GGTGCAGCCA CCGATCCTCA AAGCCTCTAT GCAAGGAAAA 
850
GAAGAGAAAG GATTAACGAG AGACTAAGGA TTTTACAAAA TCTCGTCCCC 
900
AATGGAACAA AGGTCGATAT TAGTACAATG CTTGAGGAAG CAGTTCATTA 
950
CGTCAAATTT TTGCAGCTCC AAATTAAGTT ATTGAGCTCT GATGATCTAT 
1000
GGATGTATGC GCCGATTGCT TTCAATGGGA TGGACATTGG TCTCAGCTCA 
1050
CCGAGATGA
1100

>AT4G33880.1 longest ORF length:352
MEAMGEWSNN LGGMYTYATE EADFMNQLLA SYDHPGTGSS SGAAASGDHQ 
50
GLYWNLGSHH NHLSLVSEAG SFCFSQESSS YSAGNSGYYT VVPPTVEENQ 
100
NETMDFGMED VTINTNSYLV GEETSECDVE KYSSGKTLMP LETVVENHDD 
150
EESLLQSEIS VTTTKSLTGS KKRSRATSTD KNKRARVNKR AQKNVEMSGD 
200
NNEGEEEEGE TKLKKRKNGA MMSRQNSSTT FCTEEESNCA DQDGGGEDSS 
250
SKEDDPSKAL NLNGKTRASR GAATDPQSLY ARKRRERINE RLRILQNLVP 
300
NGTKVDISTM LEEAVHYVKF LQLQIKLLSS DDLWMYAPIA FNGMDIGLSS 
350
PR
400