|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT4G34410 | RRTF1 (Redox Responsive Transcription Factor1 ), ERF109 | redox responsive transcription factor 1 (.1) |
>AT4G34410.1 CDS map
>>Show genomic map
Uncut enzymes: AatII, Acc65I, AccI, AccIII(BspMII), AclI, AfeI, AflII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaII, AvrII, BaeI, BalI, BamHI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BlpI, BmrI, BpmI, BsaBI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BspDI, BspEI, BspHI, BspMI, BsrBI, BsrFI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstEII, BstNI, BstXI, BstZ17I, Bsu36I, BtsI, Cfr10I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRV, FauI, FokI, FseI, FspI, HgaI, HincII, HindIII, HpaI, HphI, I-CeuI, I-SceI, KpnI, MboII, MluI, MlyI, MnlI, MscI, MseI, MslI, N.BstNBI, NaeI, , NcoI, NdeI, NgoMIV, NheI, NlaIII, NotI, NruI, NspI, PI-PspI, PI-SceI(VDE), PacI, PciI, PflFI, PflMI, PleI, PmeI, PpuMI, PsiI, PspGI, PspOMI, PstI, PvuI, RsrII, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SgrAI, SmaI, SnaBI, SphI, SspI, StuI, SwaI, Tth111I, XbaI, XcmI, XmaI, XmnI
| Name | Recognition sequence | Cut positions |
| AccII(FnuDII) | CG|CG | 181, 259, 532 |
| AciI | C|CGC | 498, 531 |
| AflIII | A|CPuPyGT | 114, 472, 587 |
| AluI | AG|CT | 34, 84, 335, 442, 517 |
| ApoI | Pu|AATTPy | 25, 436 |
| AvaI | C|PyCGPuG | 515 |
| BanI | G|GPyPuCC | 141 |
| BanII | GPuGCPy|C | 35, 336 |
| BfaI | C|TAG | 309 |
| BsaAI | PyAC|GTPu | 115, 473 |
| BsaHI | GPu|CGPyC | 141 |
| BsaJI | C|CNNGG | 193, 344, 427, 546, 553 |
| BsaWI | [AT]|CCGG[AT] | 75 |
| BsiHKAI | G[AT]GC[AT]|C | 35, 336 |
| BslI | CCNNNNN|NNGG | 49, 150, 578 |
| BsmI | GAATGCN| | 189 |
| BsoBI | C|PyCGPuG | 515 |
| Bsp1286I | G[GAT]GC[CAT]|C | 35, 336 |
| BspT107I(HgiCI) | G|G[TC][AG]CC | 141 |
| BsrDI | GCAATGNN| | 686 |
| BssKI | |CCNGG | 49 |
| BstBI | TT|CGAA | 493 |
| BstF5I | GGATGNN| | 236, 726 |
| BstUI | CG|CG | 181, 259, 532 |
| BstYI | Pu|GATCPy | 456 |
| BtgI | C|CPuPyGG | 344, 546 |
| BtrI | CAC|GTC | 588 |
| Cac8I | GCN|NGC | 643 |
| DdeI | C|TNAG | 122, 445 |
| DpnI | GA-CH3|TC | 118, 226, 448, 455, 524 |
| DpnII | |GATC | 118, 226, 448, 455, 524 |
| EcoRI | G|AATTC | 25 |
| Fnu4HI | GC|NGC | 441, 510, 531, 612 |
| HaeII | PuGCGC|Py | 141, 646, 658 |
| HaeIII | GG|CC | 549 |
| HhaI | GCG|C | 140, 180, 260, 645, 657 |
| HinP1I | G|CGC | 140, 180, 260, 645, 657 |
| HinfI | G|ANTC | 201, 284, 541, 666, 762, 771 |
| HpaII | C|CGG | 49, 74 |
| Hpy188I | TCN|GA | 31, 204, 269, 451, 768 |
| Hpy99I | CG[AT]CG| | 29 |
| HpyCH4III | ACN|GT | 171 |
| HpyCH4IV | A|CGT | 114, 472, 587 |
| HpyCH4V | TG|CA | 0, 108, 439, 640, 707 |
| KasI | G|GCGCC | 141 |
| MboI | |GATC | 118, 226, 448, 455, 524 |
| MfeI | C|AATTG | 785 |
| MspA1I | C[AC]G|C[GT]G | 443 |
| MspI | C|CGG | 49, 74 |
| MwoI | GCNNNNN|NNGC | 354, 507 |
| NarI | GG|CGCC | 141 |
| NciI | CC|[CG]GG | 49 |
| NlaIV | GGN|NCC | 141 |
| NsiI | ATGCA|T | 1 |
| PaeR7I | C|TCGAG | 515 |
| PmlI | CAC|GTG | 115, 473 |
| PshAI | GACNN|NNGTC | 212 |
| PvuII | CAG|CTG | 443 |
| RsaI | GT|AC | 486 |
| SacI | GAGCT|C | 35, 336 |
| Sau3AI | |GATC | 118, 226, 448, 455, 524 |
| Sau96I | G|GNCC | 549 |
| ScrFI | CC|NGG | 49 |
| SfcI | C|TPuPyAG | 222 |
| SfoI | GGC|GCC | 141 |
| SmlI | C|TPyPuAG | 515 |
| SpeI | A|CTAGT | 310 |
| StyI | C|C[AT][AT]GG | 427, 553 |
| Taqƒ¿I | T|CGA | 228, 492, 514, 526 |
| TfiI | G|A[AT]TC | 201, 284, 541, 666, 762, 771 |
| TliI | C|TCGAG | 515 |
| TseI | G|C[AT]GC | 441, 612 |
| Tsp45I | |GT[CG]AC | 71, 163 |
| Tsp509I | |AATT | 24, 274, 435, 784 |
| TspRI | NNCA[CG]TGNN| | 163, 174, 652 |
| XhoI | C|TCGAG | 515 |
Click here to view TAIR data
>AT4G34410.1 length:807
ATGCATTATC CTAACAACAG AACCGAATTC GTCGGAGCTC CAGCCCCAAC | 50 |
CCGGTATCAA AAGGAGCAGT TGTCACCGGA GCAAGAGCTT TCAGTTATTG | 100 |
TCTCTGCTTT GCAACACGTG ATCTCAGGGG AAAACGAAAC GGCGCCGTGT | 150 |
CAGGGTTTTT CCAGTGACAG CACAGTGATA AGCGCGGGAA TGCCTCGGTT | 200 |
GGATTCAGAC ACTTGTCAAG TCTGTAGGAT CGAAGGATGT CTCGGCTGTA | 250 |
ACTACTTTTT CGCGCCAAAT CAGAGAATTG AAAAGAATCA TCAACAAGAA | 300 |
GAAGAGATTA CTAGTAGTAG TAACAGAAGA AGAGAGAGCT CTCCCGTGGC | 350 |
GAAGAAAGCG GAAGGTGGCG GGAAAATCAG GAAGAGGAAG AACAAGAAGA | 400 |
ATGGTTACAG AGGAGTTAGG CAAAGACCTT GGGGAAAATT TGCAGCTGAG | 450 |
ATCAGAGATC CTAAAAGAGC CACACGTGTT TGGCTTGGTA CTTTCGAAAC | 500 |
CGCCGAAGAT GCGGCTCGAG CTTATGATCG AGCCGCGATT GGATTCCGTG | 550 |
GGCCAAGGGC TAAACTCAAC TTCCCCTTTG TGGATTACAC GTCTTCAGTT | 600 |
TCATCTCCTG TTGCTGCTGA TGATATAGGA GCAAAGGCAA GTGCAAGCGC | 650 |
CAGTGTGAGC GCCACAGATT CAGTTGAAGC AGAGCAATGG AACGGAGGAG | 700 |
GAGGGGATTG CAATATGGAG GAGTGGATGA ATATGATGAT GATGATGGAT | 750 |
TTTGGGAATG GAGATTCTTC AGATTCAGGA AATACAATTG CTGATATGTT | 800 |
CCAGTGA | 850 |
>AT4G34410.1 longest ORF length:268
MHYPNNRTEF VGAPAPTRYQ KEQLSPEQEL SVIVSALQHV ISGENETAPC | 50 |
QGFSSDSTVI SAGMPRLDSD TCQVCRIEGC LGCNYFFAPN QRIEKNHQQE | 100 |
EEITSSSNRR RESSPVAKKA EGGGKIRKRK NKKNGYRGVR QRPWGKFAAE | 150 |
IRDPKRATRV WLGTFETAED AARAYDRAAI GFRGPRAKLN FPFVDYTSSV | 200 |
SSPVAADDIG AKASASASVS ATDSVEAEQW NGGGGDCNME EWMNMMMMMD | 250 |
FGNGDSSDSG NTIADMFQ | 300 |