fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G36620 GATA19, HANL2 hanaba taranu like 2, GATA transcription factor 19 (.1)

>AT4G36620.1 CDS map

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Uncut enzymes: Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BamHI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BfaI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaI, BsaXI, BseRI, BsgI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, Bsp1286I, BspDI, BspEI, BspMI, BsrBI, BsrDI, BsrGI, BsrI, BssHII, BssKI, BssSI, BstAPI, BstBI, BstEII, BstNI, BstUI, BstXI, BstYI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, ClaI, DdeI, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HindIII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, N.BstNBI, , NarI, NciI, NcoI, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PleI, PmeI, PmlI, PshAI, PspGI, PspOMI, PvuI, RsaI, SacI, SacII, SalI, SapI, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TliI, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AatII GACGT|C 34, 556
AciI C|CGC 342
AluI AG|CT 379
AvaII G|G[AT]CC 270, 279, 604
BanI G|GPyPuCC 464
BclI T|GATCA 549
BsaHI GPu|CGPyC 34, 556
BsaJI C|CNNGG 460
BsaWI [AT]|CCGG[AT] 602
BsiEI CGPuPy|CG 341, 600
BslI CCNNNNN|NNGG 160
BspHI T|CATGA 552
BspT107I(HgiCI) G|G[TC][AG]CC 464
BsrFI Pu|CCGGPy 504, 607
BstF5I GGATGNN| 118
Cac8I GCN|NGC 220, 504
Cfr10I [AG]|CCGG[TC] 504, 607
DpnI GA-CH3|TC 369, 398, 548
DpnII |GATC 369, 398, 548
EaeI Py|GGCCPu 506
EcoO109I PuG|GNCCPy 280
Fnu4HI GC|NGC 199, 378
HaeIII GG|CC 505, 608
HhaI GCG|C 228
HinP1I G|CGC 228
HincII GTPy|PuAC 67
HinfI G|ANTC 130, 307, 313
HpaII C|CGG 360, 503, 601, 606
Hpy188I TCN|GA 147, 310, 538
Hpy99I CG[AT]CG| 32, 454, 593
HpyCH4III ACN|GT 175, 268
HpyCH4IV A|CGT 33, 124, 331, 525, 555, 591
HpyCH4V TG|CA 71, 107, 334, 376, 412
MboI |GATC 369, 398, 548
MseI T|TAA 588
MspA1I C[AC]G|C[GT]G 380
MspI C|CGG 360, 503, 601, 606
MwoI GCNNNNN|NNGC 196, 235, 342, 470
NaeI GCC|GGC 504
NdeI CA|TATG 56
NgoMIV G|CCGGC 504
NlaIII CATG| 551
NlaIV GGN|NCC 178, 280, 464
PflMI CCANNNN|NTGG 160
PpuMI PuG|G[AT]CCPy 280
PsiI TTA|TAA 426
PstI CTGCA|G 377
PvuII CAG|CTG 380
RsrII CG|G[AT]CCG 605
Sau3AI |GATC 369, 398, 548
Sau96I G|GNCC 270, 279, 604
SfcI C|TPuPyAG 377
StyI C|C[AT][AT]GG 460
Taq��I T|CGA 338, 353
TfiI G|A[AT]TC 130, 307, 313
TseI G|C[AT]GC 378
Tsp45I |GT[CG]AC 558
Tsp509I |AATT 416


Click here to view TAIR data

>AT4G36620.1 length:636
ATGGGTTTCT CAATGTTCTT CTCCCCCGAA AACGACGTCA GCCATCATTC 
50
CTCTCCATAT GCTTCTGTTG ACTGCACTCT CTCACTTGGA ACTCCCTCCA 
100
CTCGCCTCTG CAACGAGGAT GATGAACGTA GATTCTCGTC TCATACCTCC 
150
GACACCATAG GCTGGGACTT CTTGAACGGT TCCAAGAAAG GCGGTGGAGG 
200
CGGCGGACAT AACCTCCTCG CTCGCCGTTG CGCCAACTGC GACACCACTT 
250
CTACTCCTCT TTGGAGAAAC GGTCCAAGAG GTCCCAAGTC GTTGTGTAAT 
300
GCGTGTGGAA TCCGATTCAA GAAAGAAGAG AGACGTGCAT CGACCGCCAG 
350
AAACTCGACC TCCGGCGGAG GATCAACTGC AGCTGGAGTT CCAACTTTGG 
400
ATCATCAAGC AAGTGCAAAT TATTATTATA ACAATAATAA CCAATATGCT 
450
TCATCGTCGC CTTGGCACCA TCAGCATAAT ACGCAGAGAG TTCCATATTA 
500
CTCGCCGGCC AATAACGAAT ACTCATACGT TGATGATGTC AGAGTTGTTG 
550
ATCATGACGT CACAACCGAC CCGTTCTTGT CTTGGAGGCT TAACGTCGCC 
600
GACCGGACCG GCCTTGTCCA CGATTTTACG ATGTGA
650

>AT4G36620.1 longest ORF length:211
MGFSMFFSPE NDVSHHSSPY ASVDCTLSLG TPSTRLCNED DERRFSSHTS 
50
DTIGWDFLNG SKKGGGGGGH NLLARRCANC DTTSTPLWRN GPRGPKSLCN 
100
ACGIRFKKEE RRASTARNST SGGGSTAAGV PTLDHQASAN YYYNNNNQYA 
150
SSSPWHHQHN TQRVPYYSPA NNEYSYVDDV RVVDHDVTTD PFLSWRLNVA 
200
DRTGLVHDFT M
250