fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G36740 HB-5, ATHB40 homeobox protein 40 (.1)

>AT4G36740.1 CDS map

>>Show genomic map




Uncut enzymes: AatII, Acc65I, AccIII(BspMII), AclI, AfeI, AflII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaII, AvrII, BaeI, BalI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, Bsp1286I, BspEI, BspHI, BspMI, BsrBI, BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, Cac8I, Cfr10I, DraI, DraIII, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HindIII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MseI, MslI, MspA1I, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PflFI, PleI, PmeI, PmlI, PpuMI, PsiI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SapI, Sau96I, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, Tsp45I, TspRI, Tth111I, XbaI, XmaI, XmnI
Name Recognition sequence Cut positions
AccI GT|[AC][TG]AC 58, 382
AccII(FnuDII) CG|CG 308
AciI C|CGC 135
AflIII A|CPuPyGT 194
AluI AG|CT 171, 261, 414, 520
AvaI C|PyCGPuG 334
BamHI G|GATCC 124
BanI G|GPyPuCC 597
BclI T|GATCA 18, 579
BfaI C|TAG 263
BsaJI C|CNNGG 128
BsaWI [AT]|CCGG[AT] 594
BslI CCNNNNN|NNGG 540
BsoBI C|PyCGPuG 334
BspDI AT|CGAT 616
BspT107I(HgiCI) G|G[TC][AG]CC 597
BssKI |CCNGG 78
BstF5I GGATGNN| 16, 217, 633
BstNI CC|[AT]GG 78
BstUI CG|CG 308
BstYI Pu|GATCPy 124
BtgI C|CPuPyGG 128
ClaI AT|CGAT 616
DdeI C|TNAG 64, 403
DpnI GA-CH3|TC 17, 123, 578
DpnII |GATC 17, 123, 578
DrdI GACNNNN|NNGTC 553
Fnu4HI GC|NGC 92, 255
HhaI GCG|C 309
HinP1I G|CGC 309
HincII GTPy|PuAC 382
HinfI G|ANTC 231, 399, 635
HpaII C|CGG 593, 599
Hpy188I TCN|GA 20, 65, 234, 299, 402, 556
Hpy99I CG[AT]CG| 306, 374, 515
HpyCH4III ACN|GT 9, 44, 151, 304, 314, 490
HpyCH4IV A|CGT 372
HpyCH4V TG|CA 436
MboI |GATC 17, 123, 578
MspI C|CGG 593, 599
MwoI GCNNNNN|NNGC 98
N.BstNBI GAGTCNNNN|N 236, 640
NlaIII CATG| 25, 193, 365
NlaIV GGN|NCC 124, 597
NspI PuCATG|Py 194
PaeR7I C|TCGAG 334
PciI A|CATGT 194
PflMI CCANNNN|NTGG 540
PshAI GACNN|NNGTC 278
PspGI |CC[AT]GG 78
RsaI GT|AC 46, 71, 343
SalI G|TCGAC 382
Sau3AI |GATC 17, 123, 578
ScrFI CC|NGG 78
SmlI C|TPyPuAG 229, 334, 355, 483
Taqƒ¿I T|CGA 333, 381, 516, 615
TfiI G|A[AT]TC 399
TliI C|TCGAG 334
TseI G|C[AT]GC 92
Tsp509I |AATT 496
XcmI CCANNNNN|NNNNTGG 128
XhoI C|TCGAG 334


Click here to view TAIR data

>AT4G36740.1 length:651
ATGAACTACA CGGTGGATGA TCAGAACATG GCTTTTATCT CTCAACTGTA 
50
CCCTGATGTC TACACTCAGA TAGTACAACC AGGAGAAGTG AAGCAGCCGA 
100
AGCGGAGGAG GAAGAAGACC AAAGGATCCG TGGCTTCCGC AGATGGAGGC 
150
AACGGTTTGT TTAGAAAGAG GAAGCTGACC GATGAACAAG TGAACATGTT 
200
GGAGATGAGT TTTGGGGATG AACACAAACT TGAGTCGGAG AGGAAAGATA 
250
GACTTGCGGC AGAGCTAGGG CTTGACCCTC GTCAAGTTGC CGTTTGGTTT 
300
CAGAACCGTC GCGCACGGTG GAAGAACAAA AGGCTCGAGG AAGAGTACAA 
350
TAAACTCAAG AACTCACATG ATAACGTCGT TGTCGACAAG TGCCGACTTG 
400
AATCTGAGGT TATTCAGCTC AAAGAACAAC TCTATGATGC AGAGAGGGAA 
450
ATCCAAAGAT TAGCAGAAAG AGTAGAAGGA GGCTCAAGCA ACAGTCCAAT 
500
TTCGTCTTCC GTTTCCGTCG AAGCTAATGA AACGCCATTT TTTGGAGACT 
550
ATAAAGTCGG AGATGATGGC GATGACTATG ATCACTTGTT TTATCCGGTG 
600
CCGGAAAATA GTTACATCGA TGAAGCGGAA TGGATGAGTC TATACATATA 
650
A
700

>AT4G36740.1 longest ORF length:216
MNYTVDDQNM AFISQLYPDV YTQIVQPGEV KQPKRRRKKT KGSVASADGG 
50
NGLFRKRKLT DEQVNMLEMS FGDEHKLESE RKDRLAAELG LDPRQVAVWF 
100
QNRRARWKNK RLEEEYNKLK NSHDNVVVDK CRLESEVIQL KEQLYDAERE 
150
IQRLAERVEG GSSNSPISSS VSVEANETPF FGDYKVGDDG DDYDHLFYPV 
200
PENSYIDEAE WMSLYI
250