fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G37650 SGR7, SHR SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1)

>AT4G37650.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, HpaI, KpnI, NdeI, NheI, NotI, PacI, SalI, SmaI, XhoI
Name Recognition sequence Cut positions
EcoRV GAT|ATC 1122
HindIII A|AGCTT 821
NcoI C|CATGG 614
PstI CTGCA|G 626
PvuII CAG|CTG 623
SacI GAGCT|C 511
SpeI A|CTAGT 18
StyI C|C[AT][AT]GG 614, 1288
XbaI T|CTAGA 816


Click here to view TAIR data

>AT4G37650.1 length:1596
ATGGATACTC TCTTTAGACT AGTCAGTCTC CAACAACAAC AACAATCCGA 
50
TAGTATCATT ACAAATCAAT CTTCGTTAAG CAGAACTTCC ACCACCACTA 
100
CTGGCTCTCC ACAAACTGCT TATCACTACA ACTTTCCACA AAACGACGTC 
150
GTCGAAGAAT GCTTCAACTT TTTCATGGAT GAAGAAGACC TTTCCTCTTC 
200
TTCTTCTCAC CACAACCATC ACAACCACAA CAATCCTAAT ACTTACTACT 
250
CTCCTTTCAC TACTCCCACC CAATACCATC CCGCCACATC ATCAACCCCT 
300
TCCTCCACCG CCGCAGCCGC AGCTTTAGCC TCGCCTTACT CCTCCTCCGG 
350
CCACCATAAT GACCCTTCCG CGTTCTCCAT ACCTCAAACT CCTCCGTCCT 
400
TCGACTTCTC AGCCAATGCC AAGTGGGCAG ACTCGGTCCT TCTTGAAGCG 
450
GCACGTGCCT TCTCCGACAA AGACACTGCA CGTGCGCAAC AAATCCTATG 
500
GACGCTCAAC GAGCTCTCTT CTCCGTACGG AGACACCGAG CAAAAACTGG 
550
CTTCTTACTT CCTCCAAGCT CTCTTCAACC GCATGACCGG TTCAGGCGAA 
600
CGATGCTACC GAACCATGGT AACAGCTGCA GCCACAGAGA AGACTTGCTC 
650
CTTCGAGTCA ACGCGAAAAA CTGTACTAAA GTTCCAAGAA GTTAGCCCCT 
700
GGGCCACGTT TGGACACGTG GCGGCAAACG GAGCAATCTT GGAAGCAGTA 
750
GACGGAGAGG CAAAGATCCA CATCGTTGAC ATAAGCTCCA CGTTTTGCAC 
800
TCAATGGCCG ACTCTTCTAG AAGCTTTAGC CACAAGATCA GACGACACGC 
850
CTCACCTAAG GCTAACCACA GTTGTCGTGG CCAACAAGTT TGTCAACGAT 
900
CAAACGGCGT CGCATCGGAT GATGAAAGAG ATCGGAAACC GAATGGAGAA 
950
ATTCGCTAGG CTTATGGGAG TTCCTTTCAA ATTTAACATT ATTCATCACG 
1000
TTGGAGATTT ATCTGAGTTT GATCTCAACG AACTCGACGT TAAACCAGAC 
1050
GAAGTCTTGG CCATTAACTG CGTAGGCGCG ATGCATGGGA TCGCTTCACG 
1100
TGGAAGCCCT AGAGACGCTG TGATATCGAG TTTCCGACGG TTAAGACCGA 
1150
GGATTGTGAC GGTCGTAGAA GAAGAAGCTG ATCTTGTCGG AGAAGAAGAA 
1200
GGTGGCTTTG ATGATGAGTT CTTGAGAGGG TTTGGAGAAT GTTTACGATG 
1250
GTTTAGGGTT TGCTTCGAGT CATGGGAAGA GAGTTTTCCA AGGACGAGCA 
1300
ACGAGAGGTT GATGCTAGAG CGTGCAGCGG GACGTGCGAT CGTTGATCTT 
1350
GTGGCTTGTG AGCCGTCGGA TTCCACGGAG AGGCGAGAGA CAGCGAGGAA 
1400
GTGGTCGAGG AGGATGAGGA ATAGTGGGTT TGGAGCGGTG GGGTATAGTG 
1450
ATGAGGTGGC GGATGATGTC AGAGCTTTGT TGAGGAGATA TAAAGAAGGT 
1500
GTTTGGTCGA TGGTACAGTG TCCTGATGCC GCCGGAATAT TCCTTTGTTG 
1550
GAGAGATCAG CCGGTGGTTT GGGCTAGTGC GTGGCGGCCA ACGTAA
1600

>AT4G37650.1 longest ORF length:531
MDTLFRLVSL QQQQQSDSII TNQSSLSRTS TTTTGSPQTA YHYNFPQNDV 
50
VEECFNFFMD EEDLSSSSSH HNHHNHNNPN TYYSPFTTPT QYHPATSSTP 
100
SSTAAAAALA SPYSSSGHHN DPSAFSIPQT PPSFDFSANA KWADSVLLEA 
150
ARAFSDKDTA RAQQILWTLN ELSSPYGDTE QKLASYFLQA LFNRMTGSGE 
200
RCYRTMVTAA ATEKTCSFES TRKTVLKFQE VSPWATFGHV AANGAILEAV 
250
DGEAKIHIVD ISSTFCTQWP TLLEALATRS DDTPHLRLTT VVVANKFVND 
300
QTASHRMMKE IGNRMEKFAR LMGVPFKFNI IHHVGDLSEF DLNELDVKPD 
350
EVLAINCVGA MHGIASRGSP RDAVISSFRR LRPRIVTVVE EEADLVGEEE 
400
GGFDDEFLRG FGECLRWFRV CFESWEESFP RTSNERLMLE RAAGRAIVDL 
450
VACEPSDSTE RRETARKWSR RMRNSGFGAV GYSDEVADDV RALLRRYKEG 
500
VWSMVQCPDA AGIFLCWRDQ PVVWASAWRP T
550