fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G37750 DRG, CKC1, ANT DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1)

>AT4G37750.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AccIII(BspMII), AclI, AfeI, AgeI, AhdI, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvrII, BaeI, BalI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BmrI, BpmI, BsaAI, BsaHI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstXI, BstZ17I, Bsu36I, BtrI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoRI, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HincII, HpaI, HphI, HpyCH4IV, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, NaeI, , NarI, NciI, NgoMIV, NheI, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PflFI, PflMI, PleI, PmeI, PmlI, PshAI, PsiI, PspOMI, PvuI, RsrII, SacI, SacII, SalI, SapI, SbfI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, Tth111I, XbaI, XcmI, XmaI
Name Recognition sequence Cut positions
AccII(FnuDII) CG|CG 1389, 1519
AciI C|CGC 1437
AflII C|TTAAG 1606
AflIII A|CPuPyGT 245
AluI AG|CT 109, 136, 292, 404, 473, 590, 620, 700, 889, 979, 1261, 1270, 1602
AlwNI CAGNNN|CTG 586
ApoI Pu|AATTPy 574
AvaI C|PyCGPuG 986, 1489
AvaII G|G[AT]CC 361, 1020
BanII GPuGCPy|C 439, 603
BfaI C|TAG 189, 507, 528, 618, 1089, 1137, 1359
BglII A|GATCT 265, 304, 692, 1227
BlpI GC|TNAGC 1601
BsaBI GATNN|NNATC 29, 1346
BsaJI C|CNNGG 395, 606, 852, 1236, 1299, 1579
BslI CCNNNNN|NNGG 228
BsoBI C|PyCGPuG 986, 1489
Bsp1286I G[GAT]GC[CAT]|C 439, 603
BspDI AT|CGAT 820
BspHI T|CATGA 435
BsrFI Pu|CCGGPy 1638
BsrI ACTGGN| 631, 877, 1016
BssKI |CCNGG 606
BstF5I GGATGNN| 775
BstNI CC|[AT]GG 606
BstUI CG|CG 1389, 1519
BstYI Pu|GATCPy 214, 265, 304, 399, 692, 1227
BtgI C|CPuPyGG 395, 1299
BtsI GCAGTGNN| 1129
Cac8I GCN|NGC 1194
Cfr10I [AG]|CCGG[TC] 1638
ClaI AT|CGAT 820
DdeI C|TNAG 261, 402, 407, 588, 1600, 1630
DpnI GA-CH3|TC 213, 264, 303, 398, 691, 995, 1226, 1346, 1551
DpnII |GATC 213, 264, 303, 398, 691, 995, 1226, 1346, 1551
EcoO109I PuG|GNCCPy 362, 1021
EcoRV GAT|ATC 1327
Fnu4HI GC|NGC 138, 622, 744, 981, 1002, 1263, 1284, 1647
HhaI GCG|C 1388
HinP1I G|CGC 1388
HindIII A|AGCTT 1271
HinfI G|ANTC 232, 317, 330, 1162, 1210, 1495, 1574, 1659
HpaII C|CGG 1508, 1637
Hpy188I TCN|GA 262, 267, 696, 791, 1058, 1549, 1631
Hpy99I CG[AT]CG| 733, 1613
HpyCH4III ACN|GT 581, 928, 1611
HpyCH4V TG|CA 139, 623, 1003, 1105, 1264
MboI |GATC 213, 264, 303, 398, 691, 995, 1226, 1346, 1551
MseI T|TAA 284, 552, 1290, 1533, 1605
MslI CAPyNN|NNPuTG 250, 1181
MspA1I C[AC]G|C[GT]G 137
MspI C|CGG 1508, 1637
MwoI GCNNNNN|NNGC 631, 987, 1269, 1446, 1518, 1634, 1653
N.BstNBI GAGTCNNNN|N 1167, 1215, 1579
NcoI C|CATGG 395
NdeI CA|TATG 992
NlaIII CATG| 244, 394, 434, 494, 539, 598, 1075, 1084, 1181, 1354
NlaIV GGN|NCC 361, 1020, 1249, 1465
NspI PuCATG|Py 245
PaeR7I C|TCGAG 986
PciI A|CATGT 245
PpuMI PuG|G[AT]CCPy 362, 1021
PspGI |CC[AT]GG 606
PstI CTGCA|G 1265
PvuII CAG|CTG 137
RsaI GT|AC 1012, 1336, 1482
Sau3AI |GATC 213, 264, 303, 398, 691, 995, 1226, 1346, 1551
Sau96I G|GNCC 361, 1020
ScaI AGT|ACT 1013, 1483
ScrFI CC|NGG 606
SfcI C|TPuPyAG 1155, 1265
SmlI C|TPyPuAG 986, 1009, 1500, 1529, 1606
StyI C|C[AT][AT]GG 395, 1236, 1579
Taqƒ¿I T|CGA 314, 819, 985
TfiI G|A[AT]TC 232, 317, 330, 1659
TliI C|TCGAG 986
TseI G|C[AT]GC 138, 622, 747, 981, 1002, 1263, 1284, 1647
Tsp45I |GT[CG]AC 181, 382, 584, 611, 925, 1164, 1314
Tsp509I |AATT 47, 512, 573, 1037, 1052, 1288
TspRI NNCA[CG]TGNN| 588, 631, 1129
XhoI C|TCGAG 986
XmnI GAANN|NNTTC 237


Click here to view TAIR data

>AT4G37750.1 length:1668
ATGAAGTCTT TTTGTGATAA TGATGATAAT AATCATAGCA ACACGACTAA 
50
TTTGTTAGGG TTCTCATTGT CTTCAAATAT GATGAAAATG GGAGGTAGAG 
100
GAGGTAGAGA AGCTATTTAC TCATCTTCAA CTTCTTCAGC TGCAACTTCT 
150
TCTTCTTCTG TTCCACCTCA ACTTGTTGTT GGTGACAACA CTAGCAACTT 
200
TGGTGTTTGC TATGGATCTA ACCCAAATGG AGGAATCTAT TCTCACATGT 
250
CTGTGATGCC ACTCAGATCT GATGGTTCTC TTTGCTTAAT GGAAGCTCTC 
300
AACAGATCTT CTCACTCGAA TCACCATCAA GATTCATCTC CAAAGGTGGA 
350
GGATTTCTTT GGGACCCATC ACAACAACAC AAGTCACAAA GAAGCCATGG 
400
ATCTTAGCTT AGATAGTTTA TTCTACAACA CCACTCATGA GCCCAACACG 
450
ACTACAAACT TTCAAGAGTT CTTTAGCTTC CCTCAAACCA GAAACCATGA 
500
GGAAGAAACT AGAAATTACG GGAATGACCC TAGTTTGACA CATGGAGGGT 
550
CTTTTAATGT AGGGGTATAT GGGGAATTTC AACAGTCACT GAGCTTATCC 
600
ATGAGCCCTG GGTCACAATC TAGCTGCATC ACTGGCTCTC ACCACCACCA 
650
ACAAAACCAA AACCAAAACC ACCAAAGCCA AAACCACCAG CAGATCTCTG 
700
AAGCTCTTGT GGAGACAAGC GTTGGGTTTG AGACGACGAC AATGGCGGCT 
750
GCGAAGAAGA AGAGGGGACA AGAGGATGTT GTAGTTGTTG GTCAGAAACA 
800
GATTGTTCAT AGAAAATCTA TCGATACTTT TGGACAACGA ACTTCTCAAT 
850
ACCGAGGCGT TACAAGACAT AGATGGACTG GTAGATATGA AGCTCATCTA 
900
TGGGACAATA GTTTCAAGAA GGAAGGTCAC AGTAGAAAAG GAAGACAAGT 
950
TTATCTGGGA GGTTATGATA TGGAGGAGAA AGCTGCTCGA GCATATGATC 
1000
TTGCTGCACT CAAGTACTGG GGTCCCTCTA CTCACACCAA TTTCTCTGCG 
1050
GAGAATTATC AGAAAGAGAT TGAAGACATG AAGAACATGA CTAGACAAGA 
1100
ATATGTTGCA CATTTGAGAA GGAAGAGCAG TGGTTTCTCT AGGGGTGCTT 
1150
CCATCTATAG AGGAGTCACA AGACATCACC AGCATGGAAG GTGGCAAGCA 
1200
CGGATTGGTA GAGTCGCTGG AAACAAAGAT CTCTACCTTG GAACTTTTGG 
1250
AACCCAAGAA GAAGCTGCAG AAGCTTACGA TGTAGCAGCA ATTAAGTTCC 
1300
GTGGCACAAA TGCTGTGACT AACTTTGATA TCACGAGGTA CGATGTTGAT 
1350
CGTATCATGT CTAGTAACAC ACTCTTGTCT GGAGAGTTAG CGCGAAGGAA 
1400
CAACAACAGC ATTGTCGTCA GGAATACTGA AGACCAAACC GCTCTAAATG 
1450
CTGTTGTGGA AGGTGGTTCC AACAAAGAAG TCAGTACTCC CGAGAGACTC 
1500
TTGAGTTTTC CGGCGATTTT CGCGTTGCCT CAAGTTAATC AAAAGATGTT 
1550
CGGATCAAAT ATGGGCGGAA ATATGAGTCC TTGGACATCA AACCCTAATG 
1600
CTGAGCTTAA GACCGTCGCT CTTACTTTGC CTCAGATGCC GGTTTTCGCT 
1650
GCTTGGGCTG ATTCTTGA
1700

>AT4G37750.1 longest ORF length:555
MKSFCDNDDN NHSNTTNLLG FSLSSNMMKM GGRGGREAIY SSSTSSAATS 
50
SSSVPPQLVV GDNTSNFGVC YGSNPNGGIY SHMSVMPLRS DGSLCLMEAL 
100
NRSSHSNHHQ DSSPKVEDFF GTHHNNTSHK EAMDLSLDSL FYNTTHEPNT 
150
TTNFQEFFSF PQTRNHEEET RNYGNDPSLT HGGSFNVGVY GEFQQSLSLS 
200
MSPGSQSSCI TGSHHHQQNQ NQNHQSQNHQ QISEALVETS VGFETTTMAA 
250
AKKKRGQEDV VVVGQKQIVH RKSIDTFGQR TSQYRGVTRH RWTGRYEAHL 
300
WDNSFKKEGH SRKGRQVYLG GYDMEEKAAR AYDLAALKYW GPSTHTNFSA 
350
ENYQKEIEDM KNMTRQEYVA HLRRKSSGFS RGASIYRGVT RHHQHGRWQA 
400
RIGRVAGNKD LYLGTFGTQE EAAEAYDVAA IKFRGTNAVT NFDITRYDVD 
450
RIMSSNTLLS GELARRNNNS IVVRNTEDQT ALNAVVEGGS NKEVSTPERL 
500
LSFPAIFALP QVNQKMFGSN MGGNMSPWTS NPNAELKTVA LTLPQMPVFA 
550
AWADS
600