|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT4G37790 | HAT22 | Homeobox-leucine zipper protein family (.1) |
>AT4G37790.1 CDS map
>>Show genomic map
Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AciI, AclI, AfeI, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvrII, BaeI, BalI, BamHI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaI, BsaJI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BslI, BsmAI, BsmBI, BsmFI, BsmI, BspDI, BspEI, BspMI, BsrDI, BsrGI, BssHII, BssKI, BssSI, BstAPI, BstBI, BstEII, BstNI, BstUI, BstXI, BstYI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, ClaI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HgaI, HpaI, HphI, HpyCH4IV, I-CeuI, I-SceI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, N.BstNBI, , NciI, NcoI, NdeI, NheI, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PciI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PvuI, RsaI, RsrII, SacI, SacII, SalI, SapI, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfiI, SmaI, SnaBI, SpeI, SphI, SspI, StyI, SwaI, XbaI, XcmI, XmaI, XmnI
| Name | Recognition sequence | Cut positions |
| AflII | C|TTAAG | 631 |
| AluI | AG|CT | 158, 378, 460, 474, 523, 618, 769 |
| ApoI | Pu|AATTPy | 197 |
| AvaI | C|PyCGPuG | 240 |
| AvaII | G|G[AT]CC | 104 |
| BanI | G|GPyPuCC | 178, 184 |
| BclI | T|GATCA | 342 |
| BfaI | C|TAG | 489, 525 |
| BsaHI | GPu|CGPyC | 184 |
| BsaWI | [AT]|CCGG[AT] | 151 |
| BsiHKAI | G[AT]GC[AT]|C | 368 |
| BsoBI | C|PyCGPuG | 240 |
| Bsp1286I | G[GAT]GC[CAT]|C | 368, 693 |
| BspHI | T|CATGA | 345 |
| BspT107I(HgiCI) | G|G[TC][AG]CC | 178, 184 |
| BsrBI | GAG|CGG | 243 |
| BsrFI | Pu|CCGGPy | 181, 187, 203, 672 |
| BsrI | ACTGGN| | 175 |
| BstF5I | GGATGNN| | 595 |
| Cac8I | GCN|NGC | 181, 187, 203, 672 |
| Cfr10I | [AG]|CCGG[TC] | 181, 187, 203, 672 |
| DdeI | C|TNAG | 141, 381, 483 |
| DpnI | GA-CH3|TC | 125, 166, 341 |
| DpnII | |GATC | 125, 166, 341 |
| DraI | TTT|AAA | 639 |
| Fnu4HI | GC|NGC | 223, 277, 675, 825 |
| HaeII | PuGCGC|Py | 184 |
| HaeIII | GG|CC | 44, 486 |
| HhaI | GCG|C | 183 |
| HinP1I | G|CGC | 183 |
| HincII | GTPy|PuAC | 135 |
| HindIII | A|AGCTT | 379 |
| HinfI | G|ANTC | 12, 137, 385, 479, 709 |
| HpaII | C|CGG | 150, 180, 186, 202, 273, 671 |
| Hpy188I | TCN|GA | 727 |
| Hpy99I | CG[AT]CG| | 130, 307, 739 |
| HpyCH4III | ACN|GT | 99, 653 |
| HpyCH4V | TG|CA | 17, 663, 823 |
| KasI | G|GCGCC | 184 |
| MboI | |GATC | 125, 166, 341 |
| MseI | T|TAA | 441, 587, 630, 638 |
| MslI | CAPyNN|NNPuTG | 350, 667 |
| MspA1I | C[AC]G|C[GT]G | 222, 475 |
| MspI | C|CGG | 150, 180, 186, 202, 273, 671 |
| MwoI | GCNNNNN|NNGC | 768 |
| NaeI | GCC|GGC | 181, 187, 203, 672 |
| NarI | GG|CGCC | 184 |
| NgoMIV | G|CCGGC | 181, 187, 203, 672 |
| NlaIII | CATG| | 15, 74, 344, 661, 667, 828 |
| NlaIV | GGN|NCC | 178, 184, 509 |
| NspI | PuCATG|Py | 662, 668, 829 |
| PaeR7I | C|TCGAG | 240 |
| PflFI | GACN|NNGTC | 213 |
| PstI | CTGCA|G | 824 |
| PvuII | CAG|CTG | 475 |
| Sau3AI | |GATC | 125, 166, 341 |
| Sau96I | G|GNCC | 104 |
| SfcI | C|TPuPyAG | 824 |
| SfoI | GGC|GCC | 184 |
| SgrAI | CPu|CCGGPyG | 188 |
| SmlI | C|TPyPuAG | 240, 631 |
| StuI | AGG|CCT | 45, 487 |
| Taqƒ¿I | T|CGA | 123, 239, 326, 411 |
| TfiI | G|A[AT]TC | 12, 479 |
| TliI | C|TCGAG | 240 |
| TseI | G|C[AT]GC | 825 |
| Tsp45I | |GT[CG]AC | 783 |
| Tsp509I | |AATT | 65, 196, 642 |
| TspRI | NNCA[CG]TGNN| | 100 |
| Tth111I | GACN|NNGTC | 213 |
| XhoI | C|TCGAG | 240 |
Click here to view TAIR data
>AT4G37790.1 length:837
ATGGGTCTTG ATGATTCATG CAACACAGGT CTTGTTCTTG GTTTAGGCCT | 50 |
CTCACCAACG CCTAATAATT ACAATCATGC CATCAAGAAA TCTTCCTCCA | 100 |
CTGTGGACCA TCGTTTCATC AGGCTCGATC CGTCGTTGAC TCTAAGCCTA | 150 |
TCCGGTGAGA GCTACAAGAT CAAGACTGGT GCCGGCGCCG GCGACCAAAT | 200 |
TTGCCGGCAG ACCTCGTCCC ACAGCGGCAT CTCATCTTTC TCGAGCGGAA | 250 |
GGGTAAAGAG AGAAAGAGAA ATCTCCGGCG GCGATGGAGA AGAAGAGGCG | 300 |
GAGGAGACGA CGGAGAGAGT GGTGTGTTCG AGAGTGAGTG ATGATCATGA | 350 |
CGATGAAGAA GGTGTTAGTG CTCGTAAAAA GCTTAGACTC ACTAAACAAC | 400 |
AATCTGCTCT TCTCGAAGAT AACTTCAAAC TTCATAGCAC CCTTAATCCC | 450 |
AAGCAAAAAC AAGCTCTTGC GAGACAGCTG AATCTAAGGC CTAGACAAGT | 500 |
TGAAGTGTGG TTCCAAAACA GGAGAGCTAG AACAAAACTA AAGCAAACAG | 550 |
AAGTGGATTG TGAGTTTTTG AAGAAATGTT GCGAGACTTT AACGGATGAG | 600 |
AATAGAAGGC TTCAAAAAGA GCTTCAAGAC CTTAAGGCTT TAAAATTGTC | 650 |
TCAACCGTTT TACATGCACA TGCCGGCGGC GACTTTGACT ATGTGCCCTT | 700 |
CTTGTGAGAG ACTCGGCGGT GGTGGTGTCG GAGGAGATAC GACGGCGGTT | 750 |
GATGAAGAAA CGGCGAAAGG AGCTTTCTCC ATCGTCACAA AGCCTCGTTT | 800 |
CTATAACCCT TTCACTAATC CTTCTGCAGC ATGTTAG | 850 |
>AT4G37790.1 longest ORF length:278
MGLDDSCNTG LVLGLGLSPT PNNYNHAIKK SSSTVDHRFI RLDPSLTLSL | 50 |
SGESYKIKTG AGAGDQICRQ TSSHSGISSF SSGRVKRERE ISGGDGEEEA | 100 |
EETTERVVCS RVSDDHDDEE GVSARKKLRL TKQQSALLED NFKLHSTLNP | 150 |
KQKQALARQL NLRPRQVEVW FQNRRARTKL KQTEVDCEFL KKCCETLTDE | 200 |
NRRLQKELQD LKALKLSQPF YMHMPAATLT MCPSCERLGG GGVGGDTTAV | 250 |
DEETAKGAFS IVTKPRFYNP FTNPSAAC | 300 |