|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT4G39070 | B-box zinc finger family protein (.1) |
>AT4G39070.1 CDS map
>>Show genomic map
Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AciI, AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvrII, BaeI, BalI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BlpI, BmrI, BpmI, BsaBI, BsaHI, BsaI, BsaJI, BsaXI, BseRI, BsgI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstNI, BstUI, BstXI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HincII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, MscI, MslI, MspA1I, NaeI, , NarI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuII, RsrII, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TliI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
| Name | Recognition sequence | Cut positions |
| AluI | AG|CT | 34, 64, 259, 416, 443 |
| AvaI | C|PyCGPuG | 414 |
| AvaII | G|G[AT]CC | 410 |
| BanII | GPuGCPy|C | 417, 444 |
| BfaI | C|TAG | 110 |
| BglII | A|GATCT | 311 |
| BsaAI | PyAC|GTPu | 502 |
| BsaWI | [AT]|CCGG[AT] | 128 |
| BsiEI | CGPuPy|CG | 84 |
| BsiHKAI | G[AT]GC[AT]|C | 268, 417, 444 |
| BslI | CCNNNNN|NNGG | 419 |
| BsoBI | C|PyCGPuG | 414 |
| Bsp1286I | G[GAT]GC[CAT]|C | 268, 417, 444 |
| BsrFI | Pu|CCGGPy | 301 |
| BsrGI | T|GTACA | 532 |
| BssKI | |CCNGG | 115, 570 |
| BstF5I | GGATGNN| | 58 |
| BstYI | Pu|GATCPy | 311 |
| Cac8I | GCN|NGC | 192 |
| Cfr10I | [AG]|CCGG[TC] | 301 |
| DdeI | C|TNAG | 274 |
| DpnI | GA-CH3|TC | 83, 310, 522, 707 |
| DpnII | |GATC | 83, 310, 522, 707 |
| EcoO109I | PuG|GNCCPy | 411 |
| Fnu4HI | GC|NGC | 63, 360 |
| HaeIII | GG|CC | 421 |
| HindIII | A|AGCTT | 35 |
| HinfI | G|ANTC | 289, 510, 654 |
| HpaII | C|CGG | 114, 127, 300, 569 |
| Hpy188I | TCN|GA | 546 |
| Hpy99I | CG[AT]CG| | 454 |
| HpyCH4III | ACN|GT | 649 |
| HpyCH4IV | A|CGT | 501 |
| HpyCH4V | TG|CA | 193, 230, 364 |
| MboI | |GATC | 83, 310, 522, 707 |
| MfeI | C|AATTG | 468 |
| MseI | T|TAA | 306 |
| MspI | C|CGG | 114, 127, 300, 569 |
| MwoI | GCNNNNN|NNGC | 60 |
| N.BstNBI | GAGTCNNNN|N | 659 |
| NciI | CC|[CG]GG | 115, 570 |
| NlaIII | CATG| | 89 |
| NlaIV | GGN|NCC | 411 |
| PmlI | CAC|GTG | 502 |
| PpuMI | PuG|G[AT]CCPy | 411 |
| PvuI | CGAT|CG | 84 |
| RsaI | GT|AC | 531 |
| SacI | GAGCT|C | 417, 444 |
| Sau3AI | |GATC | 83, 310, 522, 707 |
| Sau96I | G|GNCC | 410 |
| ScrFI | CC|NGG | 115, 570 |
| Taqƒ¿I | T|CGA | 373, 401, 452 |
| TfiI | G|A[AT]TC | 289, 510 |
| TseI | G|C[AT]GC | 63, 360 |
| Tsp45I | |GT[CG]AC | 241 |
| Tsp509I | |AATT | 347, 467, 684 |
| TspRI | NNCA[CG]TGNN| | 652 |
Click here to view TAIR data
>AT4G39070.1 length:729
ATGAAGATTT GGTGTGCTGT TTGTGATAAA GAAGAAGCTT CGGTGTTTTG | 50 |
TTGTGCGGAT GAAGCAGCTC TTTGTAATGG TTGCGATCGC CATGTTCATT | 100 |
TCGCCAATAA ACTAGCCGGG AAACATCTCC GGTTCTCTCT CACTTCTCCT | 150 |
ACTTTCAAAG ATGCTCCTCT TTGTGATATT TGCGGGGAGA GGCGTGCATT | 200 |
ATTATTTTGC CAAGAAGACA GAGCAATACT ATGCAGAGAA TGTGACATTC | 250 |
CAATACATCA AGCTAATGAG CACACTAAGA AACACAATAG ATTCCTCCTT | 300 |
ACCGGCGTTA AGATCTCTGC CTCCCCGTCA GCCTACCCAA GAGCCTCCAA | 350 |
TTCCAACTCT GCTGCTGCAT TTGGTCGAGC CAAAACCCGA CCAAAATCAG | 400 |
TATCGAGCGA GGTCCCGAGC TCGGCCTCCA ATGAGGTATT TACGAGCTCT | 450 |
TCTTCGACGA CCACGAGCAA TTGCTATTAT GGGATAGAAG AAAACTACCA | 500 |
TCACGTGAGC GATTCGGGGT CGGGATCGGG TTGTACAGGT AGTATATCCG | 550 |
AGTATTTGAT GGAGACATTA CCGGGTTGGA GAGTGGAGGA TTTGCTTGAA | 600 |
CACCCTTCTT GTGTCTCCTA TGAGGATAAC ATTATTACTA ATAACAATAA | 650 |
CAGTGAGTCT TATAGGGTTT ATGATGGTTC TTCACAATTC CATCATCAAG | 700 |
GGTTTTGGGA TCACAAACCC TTCTCTTGA | 750 |
>AT4G39070.1 longest ORF length:242
MKIWCAVCDK EEASVFCCAD EAALCNGCDR HVHFANKLAG KHLRFSLTSP | 50 |
TFKDAPLCDI CGERRALLFC QEDRAILCRE CDIPIHQANE HTKKHNRFLL | 100 |
TGVKISASPS AYPRASNSNS AAAFGRAKTR PKSVSSEVPS SASNEVFTSS | 150 |
SSTTTSNCYY GIEENYHHVS DSGSGSGCTG SISEYLMETL PGWRVEDLLE | 200 |
HPSCVSYEDN IITNNNNSES YRVYDGSSQF HHQGFWDHKP FS | 250 |