|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT4G39160 | Homeodomain-like superfamily protein (.1.2) |
>AT4G39160.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BamHI, EcoRV, KpnI, NcoI, NheI, NotI, PacI, PstI, SacI, SmaI, SpeI, StyI
| Name | Recognition sequence | Cut positions |
| BglII | A|GATCT | 177, 717, 1075 |
| EcoRI | G|AATTC | 1782 |
| HindIII | A|AGCTT | 1489, 1552 |
| HpaI | GTT|AAC | 1303 |
| NdeI | CA|TATG | 545 |
| PvuII | CAG|CTG | 1417, 1691 |
| SalI | G|TCGAC | 1019 |
| XbaI | T|CTAGA | 189 |
| XhoI | C|TCGAG | 589 |
Click here to view TAIR data
>AT4G39160.1 length:1806
ATGGATTTAG ATTTTGATGA TCAACCCTCG GATCATGCTG CACCAGCAGT | 50 |
TAGGGCTGGT GCAAGGTTTA AACCAAAAGG CAGACCACAA CCCAAGAAGA | 100 |
AGCAAGTCTC TCTTTCCACA ACCCAAACAA CACTCTCCCC TGATGTTGCC | 150 |
CAGGAAAAAC TCTCAACACA AAGTGAAGAT CTCGTCCCTC TAGACGGATC | 200 |
ATCGGAGATT CCCAGCAATG CTTTACCTTC TGAGACTAAT GTGCCGGATA | 250 |
GTGGAAGTAT TAACAAATCT ACCATTGGAA CATTATCAGA AGAGAATGAA | 300 |
GATGCATTCC CAAGAGGGGT TCATTGGTCT GTGAAACCAT CTATTCTTCG | 350 |
TGCTTGTAAT AACGTGAATT TGGTGGGAAA TAGACGTGAT GATGGCATAG | 400 |
AGGCGACGAC TTCATTTCCT GATGATCCTA GAACACAAGA TTCTGCAATA | 450 |
TTTGGAGATT ATGTTACTCC TGAAACCGGG GCAGACGAGG GTCGTGTGGA | 500 |
CATGGAAACT CTTGATATTG TACAGGAGGA AGGCACCACC AGTTCATATG | 550 |
TGCAACATAC TGGAAAGTTG CAACCAAAAC CTAGATTACT CGAGACTGTG | 600 |
GTTGAAGAAC CTGAGCCTCA TTACTCCGCT GGTGATACTG GTTATTTTCC | 650 |
AATGGGTACG AACGAGTCTG AGTTTATGGC CAATGTGGAA TCAAGAAACG | 700 |
GTTTCAGTAC TTATGAAGAT CTTCAAGAAG AAGAACTTAA TATTCCTGAA | 750 |
GCCCCCAGAG AAACGGTTGG TGAGATGGAG GCGCAAAATG CTTCTGGCGG | 800 |
ATGGGAACAA GAAGAACAGG GTGTATCGCC TTGCATTAAC AATACAGTTA | 850 |
CAGGAGAAGA AGAAAATTGT ATGGGGAATA CAGTAGAAGA ACAGTCTAAA | 900 |
AGAGAAAGCA AAACTGGAAA ATCGAAGCGA GCTACTTCTC GAAAGCGGAA | 950 |
AAAGACAAGT GAAGAACCAA ATAAGTCTAG CGAAAAAACA GAGCAGAAGA | 1000 |
AGTTCAAGCA TTCAAGTCGT CGACAAAAAA GAACACTGGA GAAGGAATTG | 1050 |
CTTGAAACCC CGGATCATGA AATCAGATCT CTGCCTCTTA GAGATATGCT | 1100 |
TCGCCTTGTC GAATATAAAG AATGGATGCA GAAAAAGGAA GCAAAGGGAG | 1150 |
CTGGTGTGCA ACCTAGCCAA GAAAGTAATA ATATGAACGG ATCAGGGAGC | 1200 |
CAGTATCATT CTCAAGGTTT TGACGAAGAA GATGAATTTG GTGACTTTGG | 1250 |
TATAGAGTCG AGCGAATATC AAGAAAATAA TGTAGTTAAA CCGGATTCAC | 1300 |
CGGTTAACTA TCAAACCTAC ATGAACAAGA CTTCAAGAAC TCGATGGTCA | 1350 |
AAGGAAGATA CAGAACTCTT CTATGAGGGT ATTCAAGAGT TTGGGAGCAA | 1400 |
TCTCTCGATG ATACAACAGC TGTTTCCTGA GAGAACGCGT GAACAGATGA | 1450 |
AGCTCAAATT CAAATTGGAG GAACGCCGAA ATCCATTGAA GCTTAATGAT | 1500 |
GCATTATCAA GTCGCTCAAA ACATTTTACT CATTTCAAGA ACGTGATTAA | 1550 |
GAAGCTTCAA CAAGAAGCCG CGGCTGCAAA AGAAGGCGAA GAAGAAGAAG | 1600 |
AAGCTGGAGC AGAAGCAGAG ACAACTGATG TTCCCGAGAA TGAGGAGCCT | 1650 |
GAGAAGTCTG AGGAGACGGA GCGAGCCAGT GATGGAGTAG CAGCTGGAGT | 1700 |
TAAGGAATCG GACGGTGGGG ATGTTGAGAA TGGCGTGAGA TCGGACGGTG | 1750 |
GAGATGAATG CGACGATGAT GAAGATTTTT GGAATTCTTA TAAGAGTGAC | 1800 |
ATGTAA | 1850 |
>AT4G39160.1 longest ORF length:601
MDLDFDDQPS DHAAPAVRAG ARFKPKGRPQ PKKKQVSLST TQTTLSPDVA | 50 |
QEKLSTQSED LVPLDGSSEI PSNALPSETN VPDSGSINKS TIGTLSEENE | 100 |
DAFPRGVHWS VKPSILRACN NVNLVGNRRD DGIEATTSFP DDPRTQDSAI | 150 |
FGDYVTPETG ADEGRVDMET LDIVQEEGTT SSYVQHTGKL QPKPRLLETV | 200 |
VEEPEPHYSA GDTGYFPMGT NESEFMANVE SRNGFSTYED LQEEELNIPE | 250 |
APRETVGEME AQNASGGWEQ EEQGVSPCIN NTVTGEEENC MGNTVEEQSK | 300 |
RESKTGKSKR ATSRKRKKTS EEPNKSSEKT EQKKFKHSSR RQKRTLEKEL | 350 |
LETPDHEIRS LPLRDMLRLV EYKEWMQKKE AKGAGVQPSQ ESNNMNGSGS | 400 |
QYHSQGFDEE DEFGDFGIES SEYQENNVVK PDSPVNYQTY MNKTSRTRWS | 450 |
KEDTELFYEG IQEFGSNLSM IQQLFPERTR EQMKLKFKLE ERRNPLKLND | 500 |
ALSSRSKHFT HFKNVIKKLQ QEAAAAKEGE EEEEAGAEAE TTDVPENEEP | 550 |
EKSEETERAS DGVAAGVKES DGGDVENGVR SDGGDECDDD EDFWNSYKSD | 600 |
M | 650 |