fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G01840 AtOFP1 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1)

>AT5G01840.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SmaI, SpeI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 621
EcoRI G|AATTC 504
SalI G|TCGAC 271
StyI C|C[AT][AT]GG 175, 184
XbaI T|CTAGA 693


Click here to view TAIR data

>AT5G01840.1 length:813
ATGGGTAATA ACTATCGGTT TAAGCTATCG GAGTTAATCC CTAACGCTTG 
50
GTTTTACAAA CTTAGAGACA TGTCCAAATC CAAGAAGAAG AATCTTCAGA 
100
GCCAACCAAA TAGCACCACC TCCAAGAAGA AACACCACGC AGTCCCTACT 
150
CCTACGTCCA CAACGCCACT CAGTCCTAGG CCTCCTAGGC GCCCTTCTCA 
200
CTCTTCCAAA GCGCCACCCT CCCATCCTCC CAGGAAGTCC TCCGGGAACC 
250
GTCTTCGTCA CCGAGCCACC GTCGACTCTA AGTCTTCCAC GACTTCCGGC 
300
GACAGCACTA CCACAGAAAC AGGTTCTTTC TCACCGGACT TTCGCTCGGA 
350
TCAAGTTCTC CTCCCCGACG AGTCATTAAC GGGCTCCTGG CACAGCCCTT 
400
GCAGCTCCAA GTTATCCAAA ACCGCAACCT TTACGCCGCC GCCGGAACTC 
450
GAACTCCGGC CCATCATTAC CAAAACGGCC GCCACCGCAC GGAAAACGGC 
500
GGTGAATTCT CCGGCGGGGG TGAGACTTAG AATGCGGTCG CCGCGGATCT 
550
CGGTGAGCAG CAGCGCAAGA AGAAGCGGGT CGTCGGCTCG GCGGAGCAGG 
600
GCGGTGGTGA AGGCGTCGGT GGATCCGAAG AGAGACTTTA AGGAGTCGAT 
650
GGAGGAGATG ATCGCTGAGA ACAAGATAAG AGCGACAAAG GATCTAGAGG 
700
AGCTTTTGGC TTGCTATCTC TGTCTCAATT CAGACGAATA TCACGCTATT 
750
ATCATCAATG TCTTCAAGCA AATCTGGCTT GATCTTAATC TTCCACCACC 
800
CCATTCCAAA TAA
850

>AT5G01840.1 longest ORF length:270
MGNNYRFKLS ELIPNAWFYK LRDMSKSKKK NLQSQPNSTT SKKKHHAVPT 
50
PTSTTPLSPR PPRRPSHSSK APPSHPPRKS SGNRLRHRAT VDSKSSTTSG 
100
DSTTTETGSF SPDFRSDQVL LPDESLTGSW HSPCSSKLSK TATFTPPPEL 
150
ELRPIITKTA ATARKTAVNS PAGVRLRMRS PRISVSSSAR RSGSSARRSR 
200
AVVKASVDPK RDFKESMEEM IAENKIRATK DLEELLACYL CLNSDEYHAI 
250
IINVFKQIWL DLNLPPPHSK 
300