fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G01860 C2H2 and C2HC zinc fingers superfamily protein (.1)

>AT5G01860.1 CDS map

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Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XhoI
Name Recognition sequence Cut positions
StyI C|C[AT][AT]GG 73, 80
XbaI T|CTAGA 552


Click here to view TAIR data

>AT5G01860.1 length:648
ATGGAACTAA ACCTCTCTAC ACCCACATCA TGTTCCTCCA GCAGCATCTC 
50
ATCATCTTCG CATGAGGCCA TCCCTAGGAC CAAGGGTAAA ACGAAAGAGG 
100
AGGTCACGGC TGAGCCGTCG AAGGAGAATC AGCAGCGGCT AGAGTTCCGC 
150
TTCCTGTTCA ACGAGAGTAG TACAAGAAAC GAGGCTAAAG CGAGGGTGTT 
200
TGCTTGCACC TTCTGCAAAA AAGAGTTCTC TACGTCTCAA GCCTTAGGAG 
250
GACATCAGAA CGCTCACAAG CAAGAGCGAT CATTGGCTAA AAGGCGTAAA 
300
GAGATCGAAA TCAACTATCC TGAACTCTCC ATCTACAGCC AGTACCCGCC 
350
AAGTGGACTT TCCTTCAGCA GCAGCTCCTC GCAGTATGAT CTCGGGGTTC 
400
GTTACAATCC TAACATTGCT AAAACTACTA AGCCCTATCC GTTCAACATC 
450
TTCGCATGTC GATTTGGATA CAGAGGGGGA CTAAATTTCC CTCCCATGTC 
500
TCACCTCTCG GTTCCAAAGA CAGACGATTT GTCCATAAAC TTGATTTCAA 
550
ATCTAGAGGG CAGCATTCAC GACCAAGCCG TAAAAAAAGA TCAACCTGAA 
600
GCTGATCCTT GCAAGGATTC TGATATAGAC TTGTCCCTTA AGCTATAG
650

>AT5G01860.1 longest ORF length:215
MELNLSTPTS CSSSSISSSS HEAIPRTKGK TKEEVTAEPS KENQQRLEFR 
50
FLFNESSTRN EAKARVFACT FCKKEFSTSQ ALGGHQNAHK QERSLAKRRK 
100
EIEINYPELS IYSQYPPSGL SFSSSSSQYD LGVRYNPNIA KTTKPYPFNI 
150
FACRFGYRGG LNFPPMSHLS VPKTDDLSIN LISNLEGSIH DQAVKKDQPE 
200
ADPCKDSDID LSLKL
250