|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT5G02030 | PNY, BLR, BLH9, RPL, HB-6, VAN, LSN | VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) |
>AT5G02030.1 CDS map
>>Show genomic map
Uncut enzymes: AatII, Acc65I, AccI, AclI, AfeI, AflII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvrII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BmrI, BpmI, BsaAI, BsaBI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsmAI, BsmBI, BsmFI, BspDI, BspHI, BspMI, BspT107I(HgiCI), BsrDI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstF5I, BstNI, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, ClaI, DraI, DraIII, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HindIII, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MlyI, MnlI, MscI, MspA1I, N.BstNBI, , NarI, NcoI, NdeI, NheI, NotI, NruI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TliI, XcmI, XhoI, XmaI
| Name | Recognition sequence | Cut positions |
| AccII(FnuDII) | CG|CG | 457, 499 |
| AccIII(BspMII) | T|CCGGA | 310, 409 |
| AciI | C|CGC | 261, 441, 1049, 1382 |
| AflIII | A|CPuPyGT | 500 |
| AluI | AG|CT | 209, 467, 750, 757, 876, 1433 |
| AvaI | C|PyCGPuG | 334, 793 |
| AvaII | G|G[AT]CC | 474, 483, 872 |
| BclI | T|GATCA | 1026 |
| BfaI | C|TAG | 207, 366, 383, 462, 984, 1302, 1386 |
| BglII | A|GATCT | 421, 1270 |
| BlpI | GC|TNAGC | 1154 |
| BsaHI | GPu|CGPyC | 127 |
| BsaJI | C|CNNGG | 1056, 1352 |
| BsaWI | [AT]|CCGG[AT] | 310, 409, 1575 |
| BsiWI | C|GTACG | 809 |
| BslI | CCNNNNN|NNGG | 111, 492, 1056 |
| BsmI | GAATGCN| | 779, 862 |
| BsoBI | C|PyCGPuG | 334, 793 |
| Bsp1286I | G[GAT]GC[CAT]|C | 796, 1394 |
| BspEI | T|CCGGA | 310, 409 |
| BsrBI | GAG|CGG | 1452 |
| BsrFI | Pu|CCGGPy | 41, 163, 427, 1506 |
| BssKI | |CCNGG | 393 |
| BstBI | TT|CGAA | 775 |
| BstEII | G|GTNACC | 1572 |
| BstUI | CG|CG | 457, 499 |
| BstYI | Pu|GATCPy | 421, 902, 1270 |
| BtgI | C|CPuPyGG | 1056 |
| Cac8I | GCN|NGC | 41, 798, 1149 |
| Cfr10I | [AG]|CCGG[TC] | 41, 163, 427, 1506 |
| DdeI | C|TNAG | 818, 838, 940, 1086, 1153, 1264, 1600 |
| DpnI | GA-CH3|TC | 281, 380, 420, 516, 626, 768, 901, 1025, 1103, 1269 |
| DpnII | |GATC | 281, 380, 420, 516, 626, 768, 901, 1025, 1103, 1269 |
| DrdI | GACNNNN|NNGTC | 322 |
| Fnu4HI | GC|NGC | 115, 159, 441, 664, 749, 801, 1453, 1519 |
| HaeIII | GG|CC | 239, 1058 |
| HincII | GTPy|PuAC | 403 |
| HinfI | G|ANTC | 72, 144, 370, 412, 506, 609, 641, 954, 1238, 1253 |
| HpaI | GTT|AAC | 403 |
| HpaII | C|CGG | 40, 111, 162, 276, 297, 309, 393, 408, 426, 1505, 1574 |
| Hpy188I | TCN|GA | 147, 481, 629, 657, 929, 939, 1265, 1562, 1586, 1601 |
| Hpy99I | CG[AT]CG| | 272, 502, 599, 631, 713, 1403, 1495 |
| HpyCH4III | ACN|GT | 214, 633, 1054, 1080, 1311, 1444 |
| HpyCH4IV | A|CGT | 315, 1069, 1297, 1407, 1544 |
| HpyCH4V | TG|CA | 7, 784, 1113 |
| MboI | |GATC | 281, 380, 420, 516, 626, 768, 901, 1025, 1103, 1269 |
| MluI | A|CGCGT | 500 |
| MseI | T|TAA | 291, 402, 510, 959 |
| MslI | CAPyNN|NNPuTG | 706, 777 |
| MspI | C|CGG | 40, 111, 162, 276, 297, 309, 393, 408, 426, 1505, 1574 |
| MwoI | GCNNNNN|NNGC | 124, 432, 810, 828, 1154 |
| NaeI | GCC|GGC | 41 |
| NciI | CC|[CG]GG | 393 |
| NgoMIV | G|CCGGC | 41 |
| NlaIII | CATG| | 23, 223, 706, 1013, 1031, 1144, 1243, 1412, 1709 |
| NlaIV | GGN|NCC | 1578 |
| NsiI | ATGCA|T | 8 |
| NspI | PuCATG|Py | 1244 |
| PflFI | GACN|NNGTC | 592 |
| RsaI | GT|AC | 808, 1299 |
| Sau3AI | |GATC | 281, 380, 420, 516, 626, 768, 901, 1025, 1103, 1269 |
| Sau96I | G|GNCC | 240, 474, 483, 872 |
| ScrFI | CC|NGG | 393 |
| SfcI | C|TPuPyAG | 213, 417 |
| Taqƒ¿I | T|CGA | 69, 503, 597, 711, 774, 1101, 1184, 1255, 1496 |
| TfiI | G|A[AT]TC | 72, 144, 412, 506, 609, 641, 954, 1238 |
| TseI | G|C[AT]GC | 159, 749, 801, 1519 |
| Tsp45I | |GT[CG]AC | 450 |
| Tsp509I | |AATT | 218, 882, 1187, 1486 |
| TspRI | NNCA[CG]TGNN| | 1447 |
| Tth111I | GACN|NNGTC | 592 |
| XbaI | T|CTAGA | 463, 985 |
| XmnI | GAANN|NNTTC | 1192, 1238 |
Click here to view TAIR data
>AT5G02030.1 length:1728
ATGGCTGATG CATACGAGCC TTATCATGTT CTTCAACAAA GCCGGCGAGA | 50 |
CAAACTTCGT ATTCCATCTC TCGATTCCCA CTTCCACTTT CACCCTCCTC | 100 |
CTCCTCCTTC CTCCGGCGGC GGAGGTGGCG TCTTTCCTCT CGCTGATTCC | 150 |
GATTTCCTCG CAGCCGGTGG CTTTCACTCC AACAACAACA ACAACCACAT | 200 |
ATCTAACCCT AGCTACAGTA ATTTCATGGG ATTTCTCGGT GGCCCTTCTT | 250 |
CTTCTTCATC CACCGCAGTC GCCGTCGCCG GAGATCATTC CTTTAACGCC | 300 |
GGACTTTCTT CCGGAGACGT TCTTGTCTTC AAACCCGAGC CTCTATCTCT | 350 |
ATCTTTGTCC TCTCACCCTA GACTCGCTTA CGATCTAGTC GTTCCCGGTG | 400 |
TTGTTAACTC CGGATTCTGT AGATCTGCCG GTGAAGCCAA CGCCGCCGCC | 450 |
GTCACCATCG CGTCTAGAAG CTCTGGTCCT CTCGGACCTT TCACGGGCTA | 500 |
CGCGTCGATT CTTAAAGGAT CAAGGTTCTT GAAACCAGCA CAGATGCTTC | 550 |
TTGATGAGTT TTGTAATGTG GGTCGTGGGA TTTACACCGA CAAAGTCATC | 600 |
GACGACGATG ATTCTTCTCT GCTTTTTGAT CCGACGGTTG AGAATCTCTG | 650 |
CGGTGTTTCT GATGGCGGCG GAGGAGATAA TGGAAAGAAA AAATCAAAAC | 700 |
TCATCTCCAT GCTCGACGAG GTTTACAAGA GGTATAAGCA ATACTATGAG | 750 |
CAGCTACAAG CTGTGATGGG ATCATTCGAA TGCGTTGCAG GTCTCGGGCA | 800 |
CGCTGCTCCG TACGCTAACT TAGCCTTGAA AGCATTGTCT AAGCATTTCA | 850 |
AGTGTTTGAA GAATGCTATA ACGGACCAGC TTCAATTCAG CCACAACAAC | 900 |
AAGATCCAAC AACAACAACA ATGTGGTCAT CCGATGAACT CTGAGAATAA | 950 |
GACTGATTCT TTAAGATTTG GAGGAAGTGA TAGTTCTAGA GGCTTATGTT | 1000 |
CTGCTGGTCA AAGACATGGA TTTCCTGATC ATCATGCTCC TGTTTGGAGA | 1050 |
CCGCACCGTG GCCTACCCGA ACGTGCTGTT ACTGTTCTAA GGGCTTGGCT | 1100 |
CTTCGATCAT TTCTTGCATC CTTATCCAAC AGATACAGAC AAACTCATGC | 1150 |
TGGCTAAGCA GACAGGTCTC TCCAGAAATC AGGTATCGAA TTGGTTCATA | 1200 |
AACGCAAGAG TTAGGGTTTG GAAGCCGATG GTGGAAGAGA TTCACATGCT | 1250 |
GGAGACTCGA CAATCTCAGA GATCTTCTTC TTCCTCTTGG AGAGACGAAC | 1300 |
GTACTAGCAC CACCGTCTTC CCTGACAACA GCAACAACAA CCCATCTTCG | 1350 |
TCCTCGGCAC AGCAAAGACC TAACAACTCA TCTCCGCCTA GACGGGCACG | 1400 |
AAACGACGAC GTTCATGGCA CAAACAACAA CAACAGCTAT GTAAACAGTG | 1450 |
GGAGCGGCGG CGGTAGTGCG GTTGGTTTCT CGTATGGAAT TGGGTCGTCG | 1500 |
AATGTGCCGG TGATGAATAG CAGCACAAAC GGAGGAGTGT CTTTGACGTT | 1550 |
AGGGCTTCAT CATCAGATTG GGTTACCGGA GCCTTTTCCG ATGACAACTG | 1600 |
CTCAGAGGTT TGGGCTTGAT GGTGGTAGTG GCGATGGTGG TGGTGGGTAT | 1650 |
GAAGGGCAAA ATCGTCAGTT TGGGAGAGAT TTTATTGGTG GTAGTAATCA | 1700 |
TCAGTTTCTA CATGATTTTG TAGGTTGA | 1750 |
>AT5G02030.1 longest ORF length:575
MADAYEPYHV LQQSRRDKLR IPSLDSHFHF HPPPPPSSGG GGGVFPLADS | 50 |
DFLAAGGFHS NNNNNHISNP SYSNFMGFLG GPSSSSSTAV AVAGDHSFNA | 100 |
GLSSGDVLVF KPEPLSLSLS SHPRLAYDLV VPGVVNSGFC RSAGEANAAA | 150 |
VTIASRSSGP LGPFTGYASI LKGSRFLKPA QMLLDEFCNV GRGIYTDKVI | 200 |
DDDDSSLLFD PTVENLCGVS DGGGGDNGKK KSKLISMLDE VYKRYKQYYE | 250 |
QLQAVMGSFE CVAGLGHAAP YANLALKALS KHFKCLKNAI TDQLQFSHNN | 300 |
KIQQQQQCGH PMNSENKTDS LRFGGSDSSR GLCSAGQRHG FPDHHAPVWR | 350 |
PHRGLPERAV TVLRAWLFDH FLHPYPTDTD KLMLAKQTGL SRNQVSNWFI | 400 |
NARVRVWKPM VEEIHMLETR QSQRSSSSSW RDERTSTTVF PDNSNNNPSS | 450 |
SSAQQRPNNS SPPRRARNDD VHGTNNNNSY VNSGSGGGSA VGFSYGIGSS | 500 |
NVPVMNSSTN GGVSLTLGLH HQIGLPEPFP MTTAQRFGLD GGSGDGGGGY | 550 |
EGQNRQFGRD FIGGSNHQFL HDFVG | 600 |