fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G02460 AtDof5. 1 Dof-type zinc finger DNA-binding family protein (.1)

>AT5G02460.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HpaI, KpnI, NdeI, NotI, PacI, SacI, SalI, SmaI, SpeI, XhoI
Name Recognition sequence Cut positions
HindIII A|AGCTT 694
NcoI C|CATGG 545
NheI G|CTAGC 252
PstI CTGCA|G 1118
PvuII CAG|CTG 1133
StyI C|C[AT][AT]GG 545
XbaI T|CTAGA 1066


Click here to view TAIR data

>AT5G02460.1 length:1200
ATGGTTTTTT CTTCATTTCC TACTTATCCT GATCATTCAT CAAACTGGCA 
50
ACAACAACAT CAACCAATCA CAACCACCGT TGGATTCACG GGAAATAACA 
100
TCAACCAACA GTTTCTTCCT CACCATCCCC TCCCACCGCA ACAGCAACAA 
150
ACGCCTCCGC AGCTTCACCA CAACAACGGT AACGGCGGAG TCGCTGTTCC 
200
CGGTGGACCT GGCGGGTTAA TCCGACCAGG TTCGATGGCG GAAAGAGCAA 
250
GGCTAGCCAA CATACCATTA CCTGAAACAG CCTTGAAGTG TCCAAGATGT 
300
GACTCAACTA ACACCAAATT CTGTTACTTC AACAACTACA GTCTCACTCA 
350
ACCTCGCCAC TTCTGCAAAG CATGCCGTCG TTACTGGACA CGTGGCGGTG 
400
CTCTAAGGAG CGTTCCCGTC GGTGGCGGTT GCCGTAGAAA CAAAAGAACC 
450
AAAAACAGCA GCGGTGGAGG TGGCGGTAGC ACCAGTAGCG GTAACAGCAA 
500
GTCACAAGAC AGCGCCACGA GCAACGACCA ATACCACCAC CGAGCCATGG 
550
CTAACAATCA GATGGGACCA CCTTCTTCGT CATCGTCTCT AAGCTCGTTG 
600
CTGTCTTCTT ACAACGCAGG GTTAATCCCC GGACATGATC ATAACAGCAA 
650
TAACAACAAC ATACTTGGAC TTGGATCATC TTTGCCTCCT CTTAAGCTTA 
700
TGCCTCCTTT AGACTTCACA GACAACTTCA CCTTACAATA CGGTGCCGTT 
750
TCAGCTCCTT CTTATCATAT AGGCGGTGGA AGCAGTGGAG GAGCGGCGGC 
800
TCTTTTAAAC GGTTTTGACC AGTGGAGATT CCCGGCAACA AACCAACTTC 
850
CTTTAGGCGG TTTAGACCCG TTTGATCAAC AACATCAAAT GGAGCAGCAG 
900
AATCCAGGTT ACGGATTGGT TACCGGGTCG GGTCAGTATC GACCTAAGAA 
950
CATTTTCCAT AACCTTATCT CCTCTTCTTC GTCTGCTTCA TCAGCTATGG 
1000
TTACAGCCAC CGCGTCGCAA TTAGCTTCAG TGAAAATGGA AGATAGTAAC 
1050
AATCAGCTCA ACTTGTCTAG ACAACTTTTT GGAGACGAAC AACAGCTCTG 
1100
GAATATTCAT GGCGCTGCTG CAGCATCCAC CGCAGCTGCA ACAAGTTCGT 
1150
GGAGTGAAGT CTCTAATAAT TTCAGTTCTT CTTCTACTAG CAATATATAA 
1200

>AT5G02460.1 longest ORF length:399
MVFSSFPTYP DHSSNWQQQH QPITTTVGFT GNNINQQFLP HHPLPPQQQQ 
50
TPPQLHHNNG NGGVAVPGGP GGLIRPGSMA ERARLANIPL PETALKCPRC 
100
DSTNTKFCYF NNYSLTQPRH FCKACRRYWT RGGALRSVPV GGGCRRNKRT 
150
KNSSGGGGGS TSSGNSKSQD SATSNDQYHH RAMANNQMGP PSSSSSLSSL 
200
LSSYNAGLIP GHDHNSNNNN ILGLGSSLPP LKLMPPLDFT DNFTLQYGAV 
250
SAPSYHIGGG SSGGAAALLN GFDQWRFPAT NQLPLGGLDP FDQQHQMEQQ 
300
NPGYGLVTGS GQYRPKNIFH NLISSSSSAS SAMVTATASQ LASVKMEDSN 
350
NQLNLSRQLF GDEQQLWNIH GAAAASTAAA TSSWSEVSNN FSSSSTSNI
400