fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G02840 LCL1 LHY/CCA1-like 1 (.1.2.3)

>AT5G02840.2 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRI, EcoRV, HpaI, KpnI, NdeI, NheI, NotI, PacI, PvuII, SacI, SalI, SmaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 750
HindIII A|AGCTT 119
NcoI C|CATGG 442
PstI CTGCA|G 848
SpeI A|CTAGT 568
StyI C|C[AT][AT]GG 322, 442
XbaI T|CTAGA 139


Click here to view TAIR data

>AT5G02840.2 length:882
ATGACCTCAA CCAATCCGGT GGTCGCCGAA GTAATACCGG CGGAAACTTC 
50
TACAGATGCT ACAGAGACGA CGATTGCAAC GACGGAAGCT GGTGAAGCAC 
100
CGGAGAAGAA GGTGAGGAAA GCTTACACAA TCACCAAGTC TAGAGAGAGT 
150
TGGACTGAAG GAGAACACGA CAAGTTTCTG GAAGCTCTTC AATTGTTTGA 
200
TCGTGACTGG AAAAAGATAG AAGATTTTGT TGGTTCAAAG ACAGTTATTC 
250
AGATCAGGAG CCATGCCCAA AAATACTTTC TAAAGGTCCA AAAAAATGGG 
300
ACTTTAGCAC ATGTTCCACC CCCTAGGCCT AAGCGCAAAG CTGCTCATCC 
350
ATATCCTCAA AAGGCATCGA AAAATGCTCA AATGTCGCTT CACGTTTCCA 
400
TGTCCTTTCC TACTCAAATA AATAACCTGC CTGGATATAC TCCATGGGAT 
450
GATGATACAT CTGCATTGTT AAACATTGCT GTAAGTGGGG TTATTCCACC 
500
AGAAGATGAA CTTGATACTC TTTGTGGAGC AGAAGTTGAT GTTGGATCAA 
550
ATGACATGAT AAGTGAAACT AGTCCTTCAG CATCTGGTAT CGGAAGCTCA 
600
AGCAGAACAC TATCAGATTC TAAGGGTTTG AGACTGGCGA AACAAGCTCC 
650
CTCAATGCAT GGTCTTCCTG ATTTTGCTGA GGTTTATAAC TTCATTGGGA 
700
GTGTGTTCGA TCCTGACAGC AAAGGCCGCA TGAAAAAGCT CAAGGAAATG 
750
GATCCTATAA ATTTCGAAAC TGTTTTGCTG TTGATGAGAA ACCTCACAGT 
800
GAACTTGTCA AACCCTGACT TTGAACCTAC TTCTGAATAT GTTGATGCTG 
850
CAGAGGAAGG TCATGAACAC TTAAGCTCTT AG
900

>AT5G02840.2 longest ORF length:293
MTSTNPVVAE VIPAETSTDA TETTIATTEA GEAPEKKVRK AYTITKSRES 
50
WTEGEHDKFL EALQLFDRDW KKIEDFVGSK TVIQIRSHAQ KYFLKVQKNG 
100
TLAHVPPPRP KRKAAHPYPQ KASKNAQMSL HVSMSFPTQI NNLPGYTPWD 
150
DDTSALLNIA VSGVIPPEDE LDTLCGAEVD VGSNDMISET SPSASGIGSS 
200
SRTLSDSKGL RLAKQAPSMH GLPDFAEVYN FIGSVFDPDS KGRMKKLKEM 
250
DPINFETVLL LMRNLTVNLS NPDFEPTSEY VDAAEEGHEH LSS
300