fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G03150 JKD JACKDAW, C2H2-like zinc finger protein (.1)

>AT5G03150.1 CDS map

>>Show genomic map




Uncut enzymes: AscI, BamHI, EcoRI, EcoRV, HindIII, HpaI, KpnI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, XbaI, XhoI
Name Recognition sequence Cut positions
ApaI GGGCC|C 413
BglII A|GATCT 254
NcoI C|CATGG 41, 319
NdeI CA|TATG 372
SmaI CCC|GGG 1412
SpeI A|CTAGT 1339
StyI C|C[AT][AT]GG 41, 319, 417


Click here to view TAIR data

>AT5G03150.1 length:1512
ATGCAGATGA TTCCAGGAGA TCCATTTTCT ATTTCATCCT CCATGGGAGG 
50
GTTTGTTCAT CAAGAAACAC ACCTTCATCA TCTTCAGCAG CAGATCCCTG 
100
ACCTTAACCC TAATTCTAAC CCTAACCCAA ATGCGAAACC AAACTCTTCA 
150
TCAGCCAAGA AGAAGAGAAA TCAACCTGGC ACTCCAGATC CAGATGCTGA 
200
TGTCATCGCT CTATCGCCAA CAACACTCAT GGCAACAAAC AGATTCGTGT 
250
GCGAGATCTG CAACAAAGGG TTTCAAAGGG ACCAGAATTT ACAACTACAT 
300
CGCCGTGGCC ACAACCTTCC ATGGAAGCTA AAGCAACGGT CCAAACAAGA 
350
AGTGATAAAG AAGAAAGTAT ACATATGTCC TATCAAGACT TGTGTACACC 
400
ATGATGCCTC CAGGGCCCTT GGAGACCTCA CTGGGATCAA GAAACACTAC 
450
AGCCGCAAAC ACGGTGAAAA GAAGTGGAAG TGTGAAAAGT GTTCTAAGAA 
500
ATACGCTGTT CAGTCTGATT GGAAGGCACA TGCGAAAACT TGTGGTACTC 
550
GTGAGTATAA ATGTGACTGT GGCACGTTGT TCTCCAGGAA AGATAGTTTC 
600
ATCACACATA GAGCGTTCTG CGACGCATTA ACTGAGGAAG GAGCGAGGAT 
650
GAGTTCACTT AGTAACAACA ATCCGGTGAT CTCTACGACG AATCTGAATT 
700
TTGGAAATGA GTCAAATGTT ATGAATAATC CAAATCTTCC TCATGGATTT 
750
GTACACCGAG GAGTTCATCA TCCCGACATT AATGCTGCTA TCTCTCAATT 
800
CGGTCTAGGG TTTGGACATG ACCTAAGTGC AATGCATGCG CAAGGTCTAT 
850
CCGAGATGGT TCAAATGGCC TCCACCGGCA ACCACCACCT CTTCCCGTCG 
900
TCATCATCAT CCCTCCCTGA TTTCTCCGGC CACCACCAAT TCCAAATTCC 
950
AATGACTTCC ACAAACCCTA GTCTCACCTT ATCATCATCC TCAACATCAC 
1000
AACAAACCTC AGCTTCACTA CAACACCAAA CCCTAAAAGA CTCATCTTTC 
1050
TCACCACTCT TCTCCTCTTC CTCCGAAAAC AAACAAAACA AGCCTCTCTC 
1100
TCCAATGTCT GCCACAGCTC TCTTACAAAA AGCTGCACAA ATGGGCTCTA 
1150
CTAGAAGCAA TTCCTCCACC GCTCCGTCAT TCTTCGCCGG CCCAACAATG 
1200
ACATCCTCCT CGGCCACCGC TTCTCCTCCT CCTAGATCGT CTTCTCCAAT 
1250
GATGATCCAA CAACAACTAA ACAACTTCAA CACCAATGTC TTAAGAGAGA 
1300
ATCATAATCG TGCTCCTCCT CCTCTTAGTG GTGTCTCCAC TAGTAGTGTG 
1350
GATAATAATC CCTTTCAATC GAACCGATCG GGTCTAAACC CGGCTCAACA 
1400
GATGGGTCTA ACCCGGGATT TTCTTGGAGT GAGCAACGAG CATCACCCTC 
1450
ACCAAACGGG TCGTCGTCCG TTTTTGCCTC AAGAACTCGC AAGGTTTGCT 
1500
CCATTGGGTT GA
1550

>AT5G03150.1 longest ORF length:503
MQMIPGDPFS ISSSMGGFVH QETHLHHLQQ QIPDLNPNSN PNPNAKPNSS 
50
SAKKKRNQPG TPDPDADVIA LSPTTLMATN RFVCEICNKG FQRDQNLQLH 
100
RRGHNLPWKL KQRSKQEVIK KKVYICPIKT CVHHDASRAL GDLTGIKKHY 
150
SRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTREYKCDC GTLFSRKDSF 
200
ITHRAFCDAL TEEGARMSSL SNNNPVISTT NLNFGNESNV MNNPNLPHGF 
250
VHRGVHHPDI NAAISQFGLG FGHDLSAMHA QGLSEMVQMA STGNHHLFPS 
300
SSSSLPDFSG HHQFQIPMTS TNPSLTLSSS STSQQTSASL QHQTLKDSSF 
350
SPLFSSSSEN KQNKPLSPMS ATALLQKAAQ MGSTRSNSST APSFFAGPTM 
400
TSSSATASPP PRSSSPMMIQ QQLNNFNTNV LRENHNRAPP PLSGVSTSSV 
450
DNNPFQSNRS GLNPAQQMGL TRDFLGVSNE HHPHQTGRRP FLPQELARFA 
500
PLG
550