fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G03415 ATDPB, DPB Transcription factor DP (.1.2)

>AT5G03415.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
EcoRV GAT|ATC 783
HindIII A|AGCTT 558
PvuII CAG|CTG 919, 985
SacI GAGCT|C 835
StyI C|C[AT][AT]GG 515


Click here to view TAIR data

>AT5G03415.1 length:1158
ATGACAACTA CTGGGTCTAA TTCTAATCAC AACCACCATG AAAGCAATAA 
50
TAACAACAAT AACCCTAGTA CTAGGTCTTG GGGCACGGCG GTTTCAGGTC 
100
AATCTGTGTC TACTAGCGGC AGTATGGGCT CTCCGTCGAG CCGGAGTGAG 
150
CAAACCATCA CCGTTGTTAC ATCTACTAGC GACACTACTT TTCAACGCCT 
200
GAATAATTTG GACATTCAAG GTGATGATGC TGGTTCTCAA GGAGCTTCTG 
250
GTGTTAAGAA GAAGAAGAGG GGACAGCGTG CGGCTGGTCC AGATAAGACT 
300
GGAAGAGGAC TACGTCAATT TAGTATGAAA GTTTGTGAAA AGGTGGAAAG 
350
CAAAGGAAGG ACAACTTACA ATGAGGTTGC AGACGAGCTT GTTGCTGAAT 
400
TTGCACTTCC AAATAACGAT GGAACATCCC CTGATCAGCA ACAGTATGAT 
450
GAGAAAAACA TAAGACGAAG AGTATATGAT GCTTTAAACG TCCTCATGGC 
500
TATGGATATA ATATCCAAGG ATAAAAAAGA AATTCAATGG AGAGGTCTTC 
550
CTCGGACAAG CTTAAGCGAC ATTGAAGAAT TAAAGAACGA ACGACTCTCA 
600
CTTAGGAACA GAATTGAGAA GAAAACTGCA TATTCCCAAG AACTGGAAGA 
650
ACAATATGTA GGCCTTCAGA ATCTGATACA GAGAAATGAG CACTTATATA 
700
GCTCAGGAAA TGCTCCCAGT GGCGGTGTTG CTCTTCCTTT TATCCTTGTC 
750
CAGACTCGTC CTCACGCAAC AGTAGAAGTG GAGATATCAG AAGATATGCA 
800
GCTCGTGCAT TTTGATTTCA ACAGCACTCC ATTTGAGCTC CACGACGACA 
850
ATTTTGTCCT CAAGACTATG AAGTTTTGTG ATCAACCGCC GCAACAACCA 
900
AACGGTCGGA ACAACAGCCA GCTGGTTTGT CACAATTTCA CGCCAGAAAA 
950
CCCTAACAAA GGCCCCAGCA CAGGTCCAAC ACCGCAGCTG GATATGTACG 
1000
AGACTCATCT TCAATCGCAA CAACATCAGC AGCATTCTCA GCTACAAATC 
1050
ATTCCTATGC CTGAGACTAA CAACGTTACT TCCAGCGCTG ATACTGCTCC 
1100
AGTGAAATCC CCGTCTCTTC CAGGGATAAT GAACTCCAGC ATGAAGCCGG 
1150
AGAATTGA
1200

>AT5G03415.1 longest ORF length:385
MTTTGSNSNH NHHESNNNNN NPSTRSWGTA VSGQSVSTSG SMGSPSSRSE 
50
QTITVVTSTS DTTFQRLNNL DIQGDDAGSQ GASGVKKKKR GQRAAGPDKT 
100
GRGLRQFSMK VCEKVESKGR TTYNEVADEL VAEFALPNND GTSPDQQQYD 
150
EKNIRRRVYD ALNVLMAMDI ISKDKKEIQW RGLPRTSLSD IEELKNERLS 
200
LRNRIEKKTA YSQELEEQYV GLQNLIQRNE HLYSSGNAPS GGVALPFILV 
250
QTRPHATVEV EISEDMQLVH FDFNSTPFEL HDDNFVLKTM KFCDQPPQQP 
300
NGRNNSQLVC HNFTPENPNK GPSTGPTPQL DMYETHLQSQ QHQQHSQLQI 
350
IPMPETNNVT SSADTAPVKS PSLPGIMNSS MKPEN
400