fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G03510 C2H2-type zinc finger family protein (.1)

>AT5G03510.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, HpaI, KpnI, NcoI, NotI, PacI, PvuII, SacI, SalI, SmaI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 753
EcoRI G|AATTC 184
EcoRV GAT|ATC 690
HindIII A|AGCTT 375, 516
NdeI CA|TATG 628
NheI G|CTAGC 439
PstI CTGCA|G 110
SpeI A|CTAGT 538
StyI C|C[AT][AT]GG 189


Click here to view TAIR data

>AT5G03510.1 length:879
ATGACAAGTG TTCTTGAGGA GAGTGGAGAC CACGCGCGTC TTGTTCTCCT 
50
CATCAAGGGC AAACGCACCA AACGTCAGCG TTCTGCGTCT CCTCTTATGA 
100
TGAACGCTGC TGCAGTATCC AGCGTTTGTA GCGGTGAACG ATCATCAGTG 
150
GAGGTAAGAG AAGAAGAAGC TGCTGGTGAA GTAGAATTCC AAGGAGCTAC 
200
CGATGAAGAC GAAGATATGG CGAATTGTCT GATCTTGTTG TCGCAAGGAC 
250
ATCAAGCAAA GAGCAGCGAC GATCATTTGT CGATGCAGAG AATGGGTTTC 
300
TTTAGCAACA AGAAACCGGT GGCTTCTCTA GGGTTAGGGC TAGACGGTGT 
350
TTACCAGTGC AAAACGTGTG ATAAAAGCTT CCATTCGTTC CAAGCGCTAG 
400
GAGGGCACAG GGCTAGTCAC AAGAAGCCAA AACTTGGAGC TAGCGTTTTC 
450
AAATGCGTCG AGAAGAAAAC GGCGTCTGCG TCTACGGTTG AAACAGTGGA 
500
AGCTGGAGCC GTAGGAAGCT TTCTTTCCCT ACAAGTGACT AGTAGTGATG 
550
GTAGCAAGAA ACCGGAGAAA ACACATGAAT GTTCAATCTG CAAGGCCGAG 
600
TTTTCTTCAG GACAAGCCTT AGGAGGACAT ATGAGGAGAC ATAGAGGTTT 
650
AACAATAAAC GCAAACGCTA CTTCAGCAAT CAAAACAGCG ATATCATCAT 
700
CAAGTCATCA TCACCATGAA GAATCTATAC GGCCAAAGAA CTTTCTCCAG 
750
TTAGATCTGA ATCTTCCAGC ACCCGAAGAT GAACGATGCT GCGAGAAACC 
800
GAAATTCGCG TTTGCATCCA AAGATCAGAT TCTTCTCTTC ACGGCCGCGT 
850
CAAATTCTTT GATTGATTGT CATCACTAA
900

>AT5G03510.1 longest ORF length:292
MTSVLEESGD HARLVLLIKG KRTKRQRSAS PLMMNAAAVS SVCSGERSSV 
50
EVREEEAAGE VEFQGATDED EDMANCLILL SQGHQAKSSD DHLSMQRMGF 
100
FSNKKPVASL GLGLDGVYQC KTCDKSFHSF QALGGHRASH KKPKLGASVF 
150
KCVEKKTASA STVETVEAGA VGSFLSLQVT SSDGSKKPEK THECSICKAE 
200
FSSGQALGGH MRRHRGLTIN ANATSAIKTA ISSSSHHHHE ESIRPKNFLQ 
250
LDLNLPAPED ERCCEKPKFA FASKDQILLF TAASNSLIDC HH
300