fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G03740 HD2C, HDT3 HISTONE DEACETYLASE 3, histone deacetylase 2C (.1)

>AT5G03740.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRV, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, SacI, SalI, SmaI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
EcoRI G|AATTC 732
HindIII A|AGCTT 154
PstI CTGCA|G 602, 788
PvuII CAG|CTG 193, 875


Click here to view TAIR data

>AT5G03740.1 length:885
ATGGAGTTCT GGGGTGTTGA AGTTAAGAAT GGCAAACCAC TTCACCTAGA 
50
TCCTGGGCTA GACAGGCTCG TGCACATCTC TCAGGTTGCT TTGGGAGAGA 
100
GTAAGAACAA TGTAACCGAA CCAATCCAGC TTTACGTGAC TGTTGGATCG 
150
GATAAGCTTC TCATTGGAAC GCTATCTCAT GAGAAGTTTC CTCAGCTGTC 
200
TACGGAGATT GTCTTGGAAA GGAACTTTGC GCTGTCTCAT ACTTGGAAGA 
250
ATGGGAGCGT TTTCTTCTCT GGTTACAAAG TTGATGCATC TGATCCCGAG 
300
CCTGAGGATT TGATTGATGA TCAACTTGAG GCTGCTGGTT TCAAAGCTGC 
350
TCCGAAATCT GCTGCGAAAC AGGTGAACTT TCAGTTGCCA AATGAAGATG 
400
TCAAAGCCAA GCAAGATGAT GACGCTGACG GTAGTGAAGA AGATTCTTCA 
450
GATGATGATG ATAGTGAAAA CTCTGGAGAC GAGGAGGAAG AGAAGGTTAC 
500
TGCTGAATCT GACAGTGAGG AAGATGACTC ATCAGACGAC GAAGAAGATG 
550
ACTCCTCAGA AGAGGAAACC CCAAAGAAGC CTGAAGAACC CAAGAAGAGG 
600
TCTGCAGAAC CCAACTCCTC CAAGAACCCT GCGTCCAACA AGAAGGCTAA 
650
GTTTGTAACT CCTCAGAAAA CAGATTCGAA GAAACCGCAT GTCCATGTTG 
700
CAACTCCTCA TCCCTCAAAA CAGGCGGGTA AGAATTCTGG TGGAGGCAGC 
750
ACTGGAGAGA CATCGAAGCA GCAGCAGACA CCGAAGTCTG CAGGAGCGTT 
800
TGGGTGCAAG TCGTGCACCA GAACCTTTAC TTCGGAAATG GGATTGCAGT 
850
CTCACACAAA GGCCAAACAC AGTGCAGCTG CTTGA
900

>AT5G03740.1 longest ORF length:294
MEFWGVEVKN GKPLHLDPGL DRLVHISQVA LGESKNNVTE PIQLYVTVGS 
50
DKLLIGTLSH EKFPQLSTEI VLERNFALSH TWKNGSVFFS GYKVDASDPE 
100
PEDLIDDQLE AAGFKAAPKS AAKQVNFQLP NEDVKAKQDD DADGSEEDSS 
150
DDDDSENSGD EEEEKVTAES DSEEDDSSDD EEDDSSEEET PKKPEEPKKR 
200
SAEPNSSKNP ASNKKAKFVT PQKTDSKKPH VHVATPHPSK QAGKNSGGGS 
250
TGETSKQQQT PKSAGAFGCK SCTRTFTSEM GLQSHTKAKH SAAA
300