Locus |
Common name |
Short description |
AT5G03740 |
HD2C, HDT3 |
HISTONE DEACETYLASE 3, histone deacetylase 2C (.1) |
>AT5G03740.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRV, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, SacI, SalI, SmaI, SpeI, StyI, XbaI, XhoI
Name |
Recognition sequence |
Cut positions |
EcoRI
| G|AATTC |
732 |
HindIII
| A|AGCTT |
154 |
PstI
| CTGCA|G |
602, 788 |
PvuII
| CAG|CTG |
193, 875 |
Click here to view TAIR data
>AT5G03740.1 length:885
ATGGAGTTCT GGGGTGTTGA AGTTAAGAAT GGCAAACCAC TTCACCTAGA | 50 |
TCCTGGGCTA GACAGGCTCG TGCACATCTC TCAGGTTGCT TTGGGAGAGA | 100 |
GTAAGAACAA TGTAACCGAA CCAATCCAGC TTTACGTGAC TGTTGGATCG | 150 |
GATAAGCTTC TCATTGGAAC GCTATCTCAT GAGAAGTTTC CTCAGCTGTC | 200 |
TACGGAGATT GTCTTGGAAA GGAACTTTGC GCTGTCTCAT ACTTGGAAGA | 250 |
ATGGGAGCGT TTTCTTCTCT GGTTACAAAG TTGATGCATC TGATCCCGAG | 300 |
CCTGAGGATT TGATTGATGA TCAACTTGAG GCTGCTGGTT TCAAAGCTGC | 350 |
TCCGAAATCT GCTGCGAAAC AGGTGAACTT TCAGTTGCCA AATGAAGATG | 400 |
TCAAAGCCAA GCAAGATGAT GACGCTGACG GTAGTGAAGA AGATTCTTCA | 450 |
GATGATGATG ATAGTGAAAA CTCTGGAGAC GAGGAGGAAG AGAAGGTTAC | 500 |
TGCTGAATCT GACAGTGAGG AAGATGACTC ATCAGACGAC GAAGAAGATG | 550 |
ACTCCTCAGA AGAGGAAACC CCAAAGAAGC CTGAAGAACC CAAGAAGAGG | 600 |
TCTGCAGAAC CCAACTCCTC CAAGAACCCT GCGTCCAACA AGAAGGCTAA | 650 |
GTTTGTAACT CCTCAGAAAA CAGATTCGAA GAAACCGCAT GTCCATGTTG | 700 |
CAACTCCTCA TCCCTCAAAA CAGGCGGGTA AGAATTCTGG TGGAGGCAGC | 750 |
ACTGGAGAGA CATCGAAGCA GCAGCAGACA CCGAAGTCTG CAGGAGCGTT | 800 |
TGGGTGCAAG TCGTGCACCA GAACCTTTAC TTCGGAAATG GGATTGCAGT | 850 |
CTCACACAAA GGCCAAACAC AGTGCAGCTG CTTGA | 900 |
>AT5G03740.1 longest ORF length:294
MEFWGVEVKN GKPLHLDPGL DRLVHISQVA LGESKNNVTE PIQLYVTVGS | 50 |
DKLLIGTLSH EKFPQLSTEI VLERNFALSH TWKNGSVFFS GYKVDASDPE | 100 |
PEDLIDDQLE AAGFKAAPKS AAKQVNFQLP NEDVKAKQDD DADGSEEDSS | 150 |
DDDDSENSGD EEEEKVTAES DSEEDDSSDD EEDDSSEEET PKKPEEPKKR | 200 |
SAEPNSSKNP ASNKKAKFVT PQKTDSKKPH VHVATPHPSK QAGKNSGGGS | 250 |
TGETSKQQQT PKSAGAFGCK SCTRTFTSEM GLQSHTKAKH SAAA | 300 |
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