fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G03840 TFL-1, TFL1 TERMINAL FLOWER 1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1)

>AT5G03840.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AccIII(BspMII), AclI, AfeI, AflII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, BaeI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstF5I, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, Cfr10I, ClaI, DraI, DraIII, DrdI, EarI, EciI, EcoNI, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HincII, HindIII, HinfI, HpaI, HphI, Hpy99I, HpyCH4III, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MwoI, N.BstNBI, NaeI, , NarI, NdeI, NgoMIV, NheI, NlaIV, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PshAI, PspOMI, PstI, PvuI, PvuII, RsaI, RsrII, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TfiI, TliI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AccII(FnuDII) CG|CG 481
AciI C|CGC 513
AflIII A|CPuPyGT 399
AluI AG|CT 132, 326
ApoI Pu|AATTPy 448
AvaII G|G[AT]CC 234
AvrII C|CTAGG 163
BalI TGG|CCA 126
BanII GPuGCPy|C 133
BfaI C|TAG 15, 162, 237, 529
BsaJI C|CNNGG 163, 177, 340
BsiEI CGPuPy|CG 455, 485
BsiHKAI G[AT]GC[AT]|C 133
BslI CCNNNNN|NNGG 163, 351, 482
Bsp1286I G[GAT]GC[CAT]|C 133
BsrI ACTGGN| 269
BssKI |CCNGG 231, 288
BstNI CC|[AT]GG 231
BstUI CG|CG 481
BstYI Pu|GATCPy 173, 193
BtgI C|CPuPyGG 177
Cac8I GCN|NGC 520
DdeI C|TNAG 85, 189
DpnI GA-CH3|TC 172, 185, 192, 271, 428, 464
DpnII |GATC 172, 185, 192, 271, 428, 464
EaeI Py|GGCCPu 126, 485
EagI C|GGCCG 485
EcoO109I PuG|GNCCPy 235
Fnu4HI GC|NGC 483, 516
HaeIII GG|CC 125, 342, 484
HpaII C|CGG 288
Hpy188I TCN|GA 190
HpyCH4IV A|CGT 305, 397
HpyCH4V TG|CA 264, 517
MboI |GATC 172, 185, 192, 271, 428, 464
MscI TGG|CCA 126
MseI T|TAA 495
MslI CAPyNN|NNPuTG 182, 208
MspA1I C[AC]G|C[GT]G 515
MspI C|CGG 288
NciI CC|[CG]GG 288
NcoI C|CATGG 177
NlaIII CATG| 128, 176
PpuMI PuG|G[AT]CCPy 235
PsiI TTA|TAA 102
PspGI |CC[AT]GG 231
SacI GAGCT|C 133
Sau3AI |GATC 172, 185, 192, 271, 428, 464
Sau96I G|GNCC 234
ScrFI CC|NGG 231, 288
StyI C|C[AT][AT]GG 163, 177, 340
Taqƒ¿I T|CGA 422, 456
TseI G|C[AT]GC 516
Tsp45I |GT[CG]AC 241
Tsp509I |AATT 333, 447
TspRI NNCA[CG]TGNN| 269


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>AT5G03840.1 length:534
ATGGAGAATA TGGGAACTAG AGTGATAGAG CCATTGATAA TGGGGAGAGT 
50
GGTAGGAGAT GTTCTTGATT TCTTCACTCC AACAACTAAG ATGAATGTTA 
100
GTTATAACAA GAAGCAAGTC TCCAATGGCC ATGAGCTCTT TCCTTCTTCT 
150
GTTTCCTCCA AGCCTAGGGT TGAGATCCAT GGTGGTGATC TCAGATCCTT 
200
CTTCACTTTG GTGATGATAG ACCCAGATGT TCCAGGTCCT AGTGACCCCT 
250
TTCTAAAAGA ACACCTGCAC TGGATCGTTA CAAACATTCC CGGCACAACA 
300
GATGCTACGT TTGGCAAAGA GGTGGTGAGC TATGAATTGC CAAGGCCAAG 
350
CATAGGGATA CATAGGTTTG TGTTTGTTCT GTTCAGGCAG AAGCAAAGAC 
400
GTGTTATCTT TCCTAATATC CCTTCGAGAG ATCACTTCAA CACTCGTAAA 
450
TTTGCGGTCG AGTATGATCT TGGTCTCCCT GTCGCGGCCG TCTTCTTTAA 
500
CGCACAAAGA GAAACCGCTG CACGCAAACG CTAG
550

>AT5G03840.1 longest ORF length:177
MENMGTRVIE PLIMGRVVGD VLDFFTPTTK MNVSYNKKQV SNGHELFPSS 
50
VSSKPRVEIH GGDLRSFFTL VMIDPDVPGP SDPFLKEHLH WIVTNIPGTT 
100
DATFGKEVVS YELPRPSIGI HRFVFVLFRQ KQRRVIFPNI PSRDHFNTRK 
150
FAVEYDLGLP VAAVFFNAQR ETAARKR
200