Locus |
Common name |
Short description |
AT5G03840 |
TFL-1, TFL1 |
TERMINAL FLOWER 1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) |
>AT5G03840.1 CDS map
>>Show genomic map

Uncut enzymes: AatII, Acc65I, AccI, AccIII(BspMII), AclI, AfeI, AflII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, BaeI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstF5I, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, Cfr10I, ClaI, DraI, DraIII, DrdI, EarI, EciI, EcoNI, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HincII, HindIII, HinfI, HpaI, HphI, Hpy99I, HpyCH4III, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MwoI, N.BstNBI, NaeI, , NarI, NdeI, NgoMIV, NheI, NlaIV, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PshAI, PspOMI, PstI, PvuI, PvuII, RsaI, RsrII, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TfiI, TliI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name |
Recognition sequence |
Cut positions |
AccII(FnuDII)
| CG|CG |
481 |
AciI
| C|CGC |
513 |
AflIII
| A|CPuPyGT |
399 |
AluI
| AG|CT |
132, 326 |
ApoI
| Pu|AATTPy |
448 |
AvaII
| G|G[AT]CC |
234 |
AvrII
| C|CTAGG |
163 |
BalI
| TGG|CCA |
126 |
BanII
| GPuGCPy|C |
133 |
BfaI
| C|TAG |
15, 162, 237, 529 |
BsaJI
| C|CNNGG |
163, 177, 340 |
BsiEI
| CGPuPy|CG |
455, 485 |
BsiHKAI
| G[AT]GC[AT]|C |
133 |
BslI
| CCNNNNN|NNGG |
163, 351, 482 |
Bsp1286I
| G[GAT]GC[CAT]|C |
133 |
BsrI
| ACTGGN| |
269 |
BssKI
| |CCNGG |
231, 288 |
BstNI
| CC|[AT]GG |
231 |
BstUI
| CG|CG |
481 |
BstYI
| Pu|GATCPy |
173, 193 |
BtgI
| C|CPuPyGG |
177 |
Cac8I
| GCN|NGC |
520 |
DdeI
| C|TNAG |
85, 189 |
DpnI
| GA-CH3|TC |
172, 185, 192, 271, 428, 464 |
DpnII
| |GATC |
172, 185, 192, 271, 428, 464 |
EaeI
| Py|GGCCPu |
126, 485 |
EagI
| C|GGCCG |
485 |
EcoO109I
| PuG|GNCCPy |
235 |
Fnu4HI
| GC|NGC |
483, 516 |
HaeIII
| GG|CC |
125, 342, 484 |
HpaII
| C|CGG |
288 |
Hpy188I
| TCN|GA |
190 |
HpyCH4IV
| A|CGT |
305, 397 |
HpyCH4V
| TG|CA |
264, 517 |
MboI
| |GATC |
172, 185, 192, 271, 428, 464 |
MscI
| TGG|CCA |
126 |
MseI
| T|TAA |
495 |
MslI
| CAPyNN|NNPuTG |
182, 208 |
MspA1I
| C[AC]G|C[GT]G |
515 |
MspI
| C|CGG |
288 |
NciI
| CC|[CG]GG |
288 |
NcoI
| C|CATGG |
177 |
NlaIII
| CATG| |
128, 176 |
PpuMI
| PuG|G[AT]CCPy |
235 |
PsiI
| TTA|TAA |
102 |
PspGI
| |CC[AT]GG |
231 |
SacI
| GAGCT|C |
133 |
Sau3AI
| |GATC |
172, 185, 192, 271, 428, 464 |
Sau96I
| G|GNCC |
234 |
ScrFI
| CC|NGG |
231, 288 |
StyI
| C|C[AT][AT]GG |
163, 177, 340 |
Taqƒ¿I
| T|CGA |
422, 456 |
TseI
| G|C[AT]GC |
516 |
Tsp45I
| |GT[CG]AC |
241 |
Tsp509I
| |AATT |
333, 447 |
TspRI
| NNCA[CG]TGNN| |
269 |
Click here to view TAIR data
>AT5G03840.1 length:534
ATGGAGAATA TGGGAACTAG AGTGATAGAG CCATTGATAA TGGGGAGAGT | 50 |
GGTAGGAGAT GTTCTTGATT TCTTCACTCC AACAACTAAG ATGAATGTTA | 100 |
GTTATAACAA GAAGCAAGTC TCCAATGGCC ATGAGCTCTT TCCTTCTTCT | 150 |
GTTTCCTCCA AGCCTAGGGT TGAGATCCAT GGTGGTGATC TCAGATCCTT | 200 |
CTTCACTTTG GTGATGATAG ACCCAGATGT TCCAGGTCCT AGTGACCCCT | 250 |
TTCTAAAAGA ACACCTGCAC TGGATCGTTA CAAACATTCC CGGCACAACA | 300 |
GATGCTACGT TTGGCAAAGA GGTGGTGAGC TATGAATTGC CAAGGCCAAG | 350 |
CATAGGGATA CATAGGTTTG TGTTTGTTCT GTTCAGGCAG AAGCAAAGAC | 400 |
GTGTTATCTT TCCTAATATC CCTTCGAGAG ATCACTTCAA CACTCGTAAA | 450 |
TTTGCGGTCG AGTATGATCT TGGTCTCCCT GTCGCGGCCG TCTTCTTTAA | 500 |
CGCACAAAGA GAAACCGCTG CACGCAAACG CTAG | 550 |
>AT5G03840.1 longest ORF length:177
MENMGTRVIE PLIMGRVVGD VLDFFTPTTK MNVSYNKKQV SNGHELFPSS | 50 |
VSSKPRVEIH GGDLRSFFTL VMIDPDVPGP SDPFLKEHLH WIVTNIPGTT | 100 |
DATFGKEVVS YELPRPSIGI HRFVFVLFRQ KQRRVIFPNI PSRDHFNTRK | 150 |
FAVEYDLGLP VAAVFFNAQR ETAARKR | 200 |
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