fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G04150 bHLH101 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)

>AT5G04150.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NheI, NotI, PacI, SalI, SmaI, SpeI, XbaI
Name Recognition sequence Cut positions
NcoI C|CATGG 10
NdeI CA|TATG 112
PstI CTGCA|G 16
PvuII CAG|CTG 427
SacI GAGCT|C 388
StyI C|C[AT][AT]GG 10
XhoI C|TCGAG 405


Click here to view TAIR data

>AT5G04150.1 length:723
ATGGAGTATC CATGGCTGCA GTCTCAAGTT CATTCCTTTT CACCTACTCT 
50
CCATTTTCCT TCCTTCCTTC ATCCTTTAGA TGATTCCAAG AGCCATAACA 
100
TCAATCTTCA TCATATGAGT CTTAGTCACA GCAATAATAC TAACAGTAAC 
150
AATAACAATT ATCAAGAAGA AGATCGAGGA GCGGTGGTTT TGGAGAAGAA 
200
ACTGAATCAC AACGCAAGCG AACGAGACCG CCGTAGAAAA CTTAACGCCT 
250
TGTACTCTTC ACTTCGTGCT CTCTTGCCTC TTTCTGATCA AAAGAGGAAG 
300
CTGAGCATTC CTATGACGGT AGCGAGAGTA GTGAAATACA TACCAGAGCA 
350
GAAGCAAGAA CTTCAACGTT TGTCTCGGAG AAAAGAAGAG CTCTTGAAGA 
400
GGATCTCGAG AAAAACTCAC CAAGAGCAGC TGAGAAACAA AGCAATGATG 
450
GACTCAATAG ATTCTTCTTC CTCTCAACGG ATCGCAGCAA ATTGGCTCAC 
500
TGACACAGAG ATTGCTGTCC AGATTGCTAC GTCGAAATGG ACATCTGTTT 
550
CAGACATGTT GCTTAGGTTA GAAGAAAACG GGCTTAATGT CATAAGCGTC 
600
TCTTCTTCCG TTTCTTCCAC CGCAAGGATC TTCTACACTC TACATCTTCA 
650
GATGAGAGGA GATTGCAAAG TGAGACTGGA GGAACTCATC AATGGTATGC 
700
TCTTGGGATT ACGCCAATCA TAA
750

>AT5G04150.1 longest ORF length:240
MEYPWLQSQV HSFSPTLHFP SFLHPLDDSK SHNINLHHMS LSHSNNTNSN 
50
NNNYQEEDRG AVVLEKKLNH NASERDRRRK LNALYSSLRA LLPLSDQKRK 
100
LSIPMTVARV VKYIPEQKQE LQRLSRRKEE LLKRISRKTH QEQLRNKAMM 
150
DSIDSSSSQR IAANWLTDTE IAVQIATSKW TSVSDMLLRL EENGLNVISV 
200
SSSVSSTARI FYTLHLQMRG DCKVRLEELI NGMLLGLRQS 
250