fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G04340 ZAT6, CZF2, C2H2 COLD INDUCED ZINC FINGER PROTEIN 2, zinc finger of Arabidopsis thaliana 6 (.1)

>AT5G04340.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRV, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SmaI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 112
EcoRI G|AATTC 118, 552, 631
HindIII A|AGCTT 339
SalI G|TCGAC 378


Click here to view TAIR data

>AT5G04340.1 length:717
ATGGCACTTG AAACTCTTAC TTCTCCAAGA TTATCTTCTC CGATGCCGAC 
50
TCTGTTTCAA GATTCAGCAC TAGGGTTTCA TGGAAGCAAA GGCAAACGAT 
100
CTAAGCGATC AAGATCTGAA TTCGACCGTC AGAGTCTCAC GGAGGATGAA 
150
TATATCGCTT TATGTCTCAT GCTTCTTGCT CGCGACGGAG ATAGAAACCG 
200
TGACCTTGAC CTGCCTTCTT CTTCGTCTTC ACCTCCTCTG CTTCCTCCTC 
250
TTCCTACTCC GATCTACAAG TGTAGCGTCT GTGACAAGGC GTTTTCGTCT 
300
TACCAGGCTC TTGGTGGACA CAAGGCAAGT CACCGGAAAA GCTTTTCGCT 
350
TACTCAATCT GCCGGAGGAG ATGAGCTGTC GACATCGTCG GCGATAACCA 
400
CGTCTGGTAT ATCCGGTGGC GGGGGAGGAA GTGTGAAGTC GCACGTTTGC 
450
TCTATCTGTC ATAAATCGTT CGCCACCGGT CAAGCTCTCG GCGGCCACAA 
500
ACGGTGCCAC TACGAAGGAA AGAACGGAGG CGGTGTGAGT AGTAGCGTGT 
550
CGAATTCTGA AGATGTGGGG TCTACAAGCC ACGTCAGCAG TGGCCACCGT 
600
GGGTTTGACC TCAACATACC GCCGATACCG GAATTCTCGA TGGTCAACGG 
650
AGACGAAGAG GTGATGAGTC CTATGCCGGC GAAGAAACTC CGGTTTGACT 
700
TCCCGGAGAA ACCCTAA
750

>AT5G04340.1 longest ORF length:238
MALETLTSPR LSSPMPTLFQ DSALGFHGSK GKRSKRSRSE FDRQSLTEDE 
50
YIALCLMLLA RDGDRNRDLD LPSSSSSPPL LPPLPTPIYK CSVCDKAFSS 
100
YQALGGHKAS HRKSFSLTQS AGGDELSTSS AITTSGISGG GGGSVKSHVC 
150
SICHKSFATG QALGGHKRCH YEGKNGGGVS SSVSNSEDVG STSHVSSGHR 
200
GFDLNIPPIP EFSMVNGDEE VMSPMPAKKL RFDFPEKP
250